BtaINT0105976 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71423429-71424740:+
Coord C1 exon
chr4:71423429-71423521
Coord A exon
chr4:71423522-71424583
Coord C2 exon
chr4:71424584-71424740
Length
1062 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCCCTGTGGTGTCACTTCAGGTA
3' ss Score
8.62
Exon sequences
Seq C1 exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAAAGATCACACAGGAGGTGGCGGTCCAGAGCTCTTGGCAAAGACGCTAAAGGAACGCTGCAG
Seq A exon
GTAACCCTTGCTTCCCCCTCCAGGCTGGTTTCCTCAGGGACACATGCTGGGGGCCCATGGAAAAATGACTATGCTGTAATTATTCTCAGATACCCTGTGCAGAGACAGGAATTCAATCACTTGGGTTTTCTGAATGCTAAAATAAGCATGTCATGCATATTAAGTAAAGGAAAAATGGGATGCAGTTGGAGCGACTGCAGTCACTTGTAGGGCTTTGGTTTCCCCTTCTTTACTGCTTAGCCTGCCTGCTCTCTTCCCCACTGGGGTGTGCACCTTGATTTGTGGCTGCTGTGGTTGTGTGCCCTGTCCCACCTTTTCTGTGGCTCAGTGGACTCCCATCCCGCCGAGCCCACTGGCCAGAGTCTTCAGGAGCAGGACATTGTATAGACTGTCTCTTCTCTCCAACCTTCCCATCTCCCATCAGAAGTTCACTGCATAACACTAACTGCTGACTTTCCCAATGCACGGCTAAGCCAAGATTTGCAGCTCAGTCATTATATATTAAATTGCAGCATTATTAGGGTCAAAATAAATCAGGAACTTACAGAAACTGTTATACTCTTATGTAACTCTGGTTTAAAGCACTTTATGGATTGAATTGAAATACTTTCAAAGCAAAGAGAGATTTGTGTTCAAAACATCTGAGAAGGTGATTTGTTTTGTAGAAGCATCAGGTGCAAATAAAGAAAACATTTTTAAACCTACTCCATTAACTATTAATATTAGCAACCTAGATCCTGGGTGATTATCGCAAGGAGGAAGGAATTGAATATAAATGAGAAAGAGTCTGGCCACTTTAGCTGTCATTTTAAACCTATTGCTTTAAAGTTATGATCATCTCCAATTAAAAATGTGATTTCTCACTCACTTATATTTCATAAGAAGCCAGTGGAAGTTGCCATGGCAAGTGTTTCCCTGAGTTTTCATATTGAAATTTATCACTCAATTAAAAAAAATGTTCTGTAGAATGTTCTTCTTTTCTACTTTCCAATCTTAGAAACAAGTGAATAGTCTAAGCAATTCACATCTAAAAAGTAATATCTCCCTGTGGTGTCACTTCAG
Seq C2 exon
GTACCTAAGCCTTTTTCTGGCCCAATAAGACTGCATTCCTCCAATCCTAATTTGTCTACACTAGATTTTGGAGAAGAGAAAAATTATTCTGATGGCTCTGAAACCTCATCAGAGTTTTCTAAAATGCAAGAGGATCTGTGTCATATTGCCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGCTTTTGAAAGTCCCA
R:
ATGGGCAATATGACACAGATCCT
Band lengths:
246-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]