RnoINT0105783 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80080131-80081359:-
Coord C1 exon
chr4:80081267-80081359
Coord A exon
chr4:80080288-80081266
Coord C2 exon
chr4:80080131-80080287
Length
979 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCCCTGTGCTGTCACGTTAGGTC
3' ss Score
7.92
Exon sequences
Seq C1 exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAGCGCTCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAATGCTGCAG
Seq A exon
GTAACCTTTGCTTCGTCACAGGGCTTGCCCTCCGCATGGCGCCTCTCTGCACGCCACGGGCAGGGTCCTCTGGCTCAATTAGGGCAGAAAAGTGAAGGTCGTGGAGTTGATCTCTCTACCTGTGTGGACAGATGACTCTAATAACAGGTCCTCTGGTTACAAGGATAAGGCCATGACAATACTTGGGCAGGGGAGAATTTCTGAAGGGGAAATGGATTGATGTTGGAGGGGCTGCCACGCTTGTGAGAATTTGGGGTCTTTCCTTCTTTAACATCTAGCTTTGTCTGTGATGCTCCCTGCTCTAGTGTGTCTTGCGAGACGGCTGCTGTGGCCCTATCCTCTGAGTTACCTCTGTTACAATCCCTCCTCGTGGACCTGTCTTCTCTCAGCGCTTACAGGCCTGAGCCTCTATTCCACAGGCCCTTTCGCCCTTTTCCTTCAAACTCCCAGCCCCCCACCTGAGCCCCCATTCTGGGTGCCAGGAGCCGTCTTTCCCAGGGACAGCTAACCTGTTGTCAAGGTCACATACTAGATGGAAACGTTAGAACCAAACGGAATCTGGAGCGTTTAGAGAAACTCTTGTCAGCCCTGGGAGCTAACGGGGATGCTTTCCGAGTAAAGAACATTTCGTGCGCAAACGTGAGCAGCTGGTTCATTTTCCAGAAGCTCCAGGTGCAAGTGAAGAAAGTCATGTGGGAACTGATTTGCTCTGGTGGCCTAGTTACATGGGAACATTCACTGTCATTTTCAACTCGTGACTGTGAAGTTTCCACCGTGTCTGAGACAGCATGTGATTTCCTGCCCATTCATAGTTTTATAGGATGCCAGTGGCGGGGAGAGCATCTCCCCAGTTTTCATTCATTTTTCTTTGGCGTTAATCCCTTGGCAGGAAGAGACACTTCTAAGATACCCCCTTAATCAGTTCCAGTCATGGAGGCTCTAGTCTGAACAGAAATCTCTCCCTGTGCTGTCACGTTAG
Seq C2 exon
GTCCCTAAACCTTTTTCTGGCCCGGTGAGACTGCACTCCTCCAATCCTAACTTGTCAACACTGGACTTTGGAGAAGAGAAGTCTTACTCGGATGGTTCTGAAGCCTCGTCGGAGTTCTCCAAGATGCAGGAGGACCTGTGCCATGTCGCCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=NA C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGCTTTTGAAAGTCCCA
R:
AGGTCCTCCTGCATCTTGGAG
Band lengths:
230-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]