DreINT0108838 @ danRer10
Intron Retention
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21535436-21538090:+
Coord C1 exon
chr16:21535436-21535539
Coord A exon
chr16:21535540-21537997
Coord C2 exon
chr16:21537998-21538090
Length
2458 bp
Sequences
Splice sites
5' ss Seq
CAGGTTACA
5' ss Score
-1.25
3' ss Seq
ATATATTTTACTTTGTGCAGGCT
3' ss Score
5.7
Exon sequences
Seq C1 exon
AACTGTCTGTATGCGAGGCTCAGTTGCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACATACTCTGCCCCAGCAATCAACGCTCTGCAG
Seq A exon
GTTACATGTTATTCACACACATACACATACACACACACAGACAAAAAAATATACATAATTTTATACTATAATCAAAAATATGATTTATTTTTTGTTAACATGATTATTAGTAATATAAATGATTTTGTTTTTAGTTAGATTAAAGGGATAGTTCAAACAAAAATTAAAATTTACTCGCTACTTACCCATGAGTGGTTTCAAAGCATTATGAGTTTATTTCTTCTGTTGAACTTGAAAGAAGATATCTTGAAGATAACTGAAAACCTGTAATCGTTGACTTCCATAATACGAAAAACAAATACTAAGGAAGTCAATGGTTACAGGTTTCCAGCTTTCTTCAAAATATCTTCTTTTGAAACAGAAGAAAGAAACTCATAAACATTTGAAACAAGTAAAGGGTGAATAAATGATGACAGAAAATGTATTCATGGTTGAACTATCCCTTTAAAGGTTACACAGTATAGCCAACAAATGTATATATGTATTTAGTTCAACTGATATTTATATATGTATCAAAATTAGTGAACAATTTAAAAACAGTTGTAAATATAAACTTAATAGTTCTGAATTTTGAAACCATTCCGGAGTAGTAGAAAAGTGTTTTAAAAATATCTAATACCCTTGTTTAACTAAGTAACCAACAAAACCTCTTTTGATGATCAAAATTGGAGAACAGTAATGAGTGTATGAAGAAAGATTAAAGACTGAAGACGGAACTCAAATTTCTGAAGGTTACAAAAAGAAATTGTACATTCCCTTGCTTTGAATGACTTAAGCACATCTGCAGCACAGGACATCAGCAAAGATTTCCCAAAGATTTTCAATCAGGTTTAGAACAGGACTCTGTTCTGGCCATTTCATTATTTCAGTTCCAGCTACAGTGTTGAACTGATTGGCCATTAAGATTCTCTTTATTGTTCTTTTATAAAAGACCTTTTGGGGGCATGGATGAGTTAGTGAACTTGTAAAGATTAAATATTTCTAGCTTGTTTAGTTTTTCAGTTTCCTTTTATAATGTTTAATACACTAAACTTCCTTAAAATCACTGCCCTCAAAAAAGGTCAATCTTAGTCCCTCAGGCCGTGGTCCAGCTGTGCCTGTGGATGCTGTTAATGTTGTTGCCTATAGCCCAACTGACAAACAATTCACAGCACAATTTCGGATGATGAGCTTTGTAGTCATAAATTAAATTATTCCACAAAAACGCTTTTACAGATGACATATTATTCTGTCTAATCTGTCCCCTATTTTGTCTTATCTGCCAAATGAGCTGCTGTAACTGCAGCGAATGTGAATAATGTCTTTGGTTATTGTTTCTGACTTAAAGACGAAGTTGTTGTTTTCTTATTTTATTTTTATTTTATTTTTTTTATTTTATCTGGTACACTTTTTCTGACAAATAATAGAGAATATCTTAATTTGATACATATAATACCAACTTTTTTAACAGTACAAAGCTGGTTGAAAATCTACAGTCTTGTCCTTTCAGTTCATATTAATTAATACATTAATTTTGTCATCGATTGAATTTTTCACATTTGACTTTTTTACTCTTTTCAAATTTTGGCAGATAAACTTTTAATTTAAAATATATACAGTGGGTGACACTTACTGCCGCAAGTGGAACCACTGCCGCACCAAAGAAATAGAAAAGTGTTTTAGGTATAACCACAGTTATGCCACCAGGGGGTACAGCCTAGGGCTATGCTTCTCAACATGTATTGTATCTTTTCTAAAGCATGTTAATTACTAAGAAAACCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCATTATTATAATTATTATTATTTTATTTTTATTTATTTATTTTTTTTTATTGAACACACCACATTACAAAAGGTACACGTACAATACCGTTCTATCTAGTATTATGAAAAGGCAAAGCTGAAAATTTATGGTTAAAGTGCCACCCAGCAGTCAAAAACTGCAGTCGCACCTACTACCGCCGCGGGGACAGCAAGCATGTCAGCAGAGGGAACATATTAAAGTCGTGACATCTATAATCACATGGTATAATCACATAATATTCTGGATTATTTAGTAAAAATAGATTAAAAATCAGTCATTACGTTAAGTAAATTTAAGCACTGAGTTTTGAAAAAGTTAGGGTTATTTTTTGTGAAAAAGTAATTATTTGTTTAAAAGACTTTTAGTAACATTTAATAAAGTTACTAGTATTTTTTGCCTTATTGTATAGTCTGAAGATTTTTTTCTCCATGTGAGTGTCAGATAATTGCAAAGCATGTAAATGTCAATTTTGATTAAATTGATCATTAATAATAAAATTAAATATTAGATCAATGCTGATCTGTTGTTTATTTATTTATTTATTTTTAAATTGGCAATTGAAACAATAAGAAGTTATACAGTATTTCAATATATTTTACTTTGTGCAG
Seq C2 exon
GCTTCAACATATGACAGCCCAAAAAAAGAGAAGAGACATCCCAGAAAATGGCGCCCTAAGAATTATGGGAAAGACAACAAAACAACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482:ENSDART00000145886:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]