HsaINT0118647 @ hg38
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24863200-24863599:-
Coord C1 exon
chr7:24863496-24863599
Coord A exon
chr7:24863293-24863495
Coord C2 exon
chr7:24863200-24863292
Length
203 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTCCTGTTTTGAAACAAAGGGT
3' ss Score
3.23
Exon sequences
Seq C1 exon
ACCTGGCGCACTGTCATGCCTACCTGGTAGAAATGAGCCAGCTCCTGCAAAGCATGGACGTCCTGCATCGGACATACTCGGCACCAGCTATCAACGCCATCCAG
Seq A exon
GTGAGCCGGACTCCTCTTCTGTTGACATTCTGGCCCTCTTCTGCTTTCCTTTCTCCTCCCAGCCTTTCACTAACAGTGGGATGCTGTGGTCAGTTGCTTCAGCCAAAGTCAAGGGGATGGAGGTGGTCACTTTGCTATGCATTTATCCTTGTCGGTTTGGTGGACTTTACTGTCTGTGCTCTCTTTCCTGTTTTGAAACAAAG
Seq C2 exon
GGTGGATCTTTTGAAAGTCCCAAAAAGGAAAAAAGATCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAACACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882:ENST00000313367:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.871
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCGCACTGTCATG
R:
CTGCAGTGTTCCTTTAGCATCT
Band lengths:
197-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development