MmuINT0113682 @ mm9
Intron Retention
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50294873-50296430:-
Coord C1 exon
chr6:50296327-50296430
Coord A exon
chr6:50295030-50296326
Coord C2 exon
chr6:50294873-50295029
Length
1297 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TCCCTGTGCTGTCACTTTAGGTC
3' ss Score
10.16
Exon sequences
Seq C1 exon
ACATGGCACACTGCCATGCCTACCTGCTGGAAATGAGCCAGCTCTTAGAAAGCATGGACGTCCTGCATCGGACATACTCGGCGCCAGCCATCAACGCCATCCAG
Seq A exon
GTTAGCCTGCAGCTCTTCTGGTCACCTTCTGGCTTCTGCCTCCTCTCTTGTTCCCCACATTTGACTAACAATGGGATGTCCTGTGTCCAGTTGCTTTAGCCAAGCTCAAGGGGATGGCTGTGGTCACTGCCCTGTGCCTCTGTCCCTCTGTCCCTGTCGTTTTGGTGGCCCTTACTGTCTGTGCTTTCTCTCTCTCTCTCTCTTTCTCCTGTTTCGAAACCAAGGGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAACGACCACACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAACGCTGCAGGTAATCTCTGCTTCGCCACAGGCTTCCCTTCCTCACGGTGCCTCTCCGCACACCCCGTGCCTCTGACTCGAGTCGGACAGAGAGGTGAAGGTTGTGGAGCTGATCTCTGTGCCTTGTGTGGAGAGATGACTCCCATAACTGAGACCCTCTGGTGACAGGGATAAGGCTGTGAAGATACTTGGGCAGGGGAGAGTTTCTGATGGGGAAATGGATTGCTGTTGGAGGGACTGCCATGCTTGTGAGAATTTGGGGGTCTTTCCTCCTTTTAACATCTAGCTTGTCTAGGATGCTCCCTGCTCTAGTATGTGCCTTGCGTGATGGCTGCTATGGCCCAATCTTCTGACCTACCCTTGTTGTTATCATCCCTTCCCATCCCTCCCCATGGGCCTATCTTCTCACAGGCCTGAACCTCTATCCCACAGGACCTTTAGCCATTTTTCTTCAAACTCCCAGCCCACACAAGAGCCCCCATTCGGGGTGCCAGGAGCCATCTTTCCCAGGCACAGCAAAGCCATGGGCAAGATCATGTACTAGATGGAATCATTGTTAGAACCAAACTGAATCTGGAGCTTTTAGAGACACCCTTAGCCCCTGGGAGCCGAACGTGGATGCTTCCCGAGTAGACAGCATTGTATGTGCAGATGTGAGCAGCGGGTTCATTTTTTTTAGAAGCTCCGGGTGCAAGTGAGGAAAGTCATGTGGGAACTGATCTGCTCTGACAGCCTAGTTACTCGGGGACAGTCGTCATTTTCAACCTGTGTCTCTGAAGTTTCCACCATGTCTGAGACACCATGTGATTTCCTGCCCGTTTGTAGTTTTATAGGATGCAGAGGCCATGGGGAGCACCTCCCCAGTGTTCATACATTTTTCTTTGAAGTTATCCCTTGGTGGGAAGATGCACTTCTAAGATGCCCCCTCAATCAGTTTCAGTCAGGGAGGCTCTAGTTTCATAGAAATCTCTCCCTGTGCTGTCACTTTAG
Seq C2 exon
GTCCCTAAGCCTTTTTCTGGCCCTGTGAGACTGCACTCCTCCAATCCTAACTTGTCGACGCTGGACTTTGGAGAAGAGAAGTCTTACTCGGATGGTTCTGAAGCCTCGTCGGAGTTCTCCAAGATGCAGGAGGATCTGTGCCATGTCGCCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822-Osbpl3:NM_027881:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGCCATGCCTACCTG
R:
CTTTGTGGGCGACATGGC
Band lengths:
255-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: