MmuEX0033224 @ mm9
Exon Skipping
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50294873-50296430:-
Coord C1 exon
chr6:50296327-50296430
Coord A exon
chr6:50296010-50296102
Coord C2 exon
chr6:50294873-50295029
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTTTCGAAACCAAGGGT
3' ss Score
2.11
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACATGGCACACTGCCATGCCTACCTGCTGGAAATGAGCCAGCTCTTAGAAAGCATGGACGTCCTGCATCGGACATACTCGGCGCCAGCCATCAACGCCATCCAG
Seq A exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAACGACCACACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAACGCTGCAG
Seq C2 exon
GTCCCTAAGCCTTTTTCTGGCCCTGTGAGACTGCACTCCTCCAATCCTAACTTGTCGACGCTGGACTTTGGAGAAGAGAAGTCTTACTCGGATGGTTCTGAAGCCTCGTCGGAGTTCTCCAAGATGCAGGAGGATCTGTGCCATGTCGCCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.903 C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATGGACGTCCTGCATC
R:
CGACGAGGCTTCAGAACCATC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: