BtaEX0025480 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71423122-71424740:+
Coord C1 exon
chr4:71423122-71423225
Coord A exon
chr4:71423429-71423521
Coord C2 exon
chr4:71424584-71424740
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTTTAAAACAAAGGGT
3' ss Score
4.15
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACCTGGCACACTGTCATGCCTACCTGGTGGAGATGAGCCAGCTTCTGCAAAATATGGACATCCTGCATCGGACATATTCGGCACCAGCTATCAATGCCATCCAG
Seq A exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAAAGATCACACAGGAGGTGGCGGTCCAGAGCTCTTGGCAAAGACGCTAAAGGAACGCTGCAG
Seq C2 exon
GTACCTAAGCCTTTTTCTGGCCCAATAAGACTGCATTCCTCCAATCCTAATTTGTCTACACTAGATTTTGGAGAAGAGAAAAATTATTCTGATGGCTCTGAAACCTCATCAGAGTTTTCTAAAATGCAAGAGGATCTGTGTCATATTGCCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.806 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGAGCCAGCTTCTGCAA
R:
TGAGGTTTCAGAGCCATCAGA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development