GgaEX6019262 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31604016-31605129:-
Coord C1 exon
chr2:31605023-31605129
Coord A exon
chr2:31604791-31604883
Coord C2 exon
chr2:31604016-31604172
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTCTTGCTTGTTATTAAAAGGTT
3' ss Score
6.26
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAGATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
Seq A exon
GTTGGACCTTTTGAAAGCCCAAAGAAGGAAAAGCGAGCACATAGGAGGTGGCGATCTAGAGTTGTTGGGAAAGAGGCTAAAGGAACATTACAG
Seq C2 exon
GTGCCTTCAGTGTTTTCTGCCCCTATGAGACTACATGCTTCCAATCCTAACTTATCTACAATAGATTTTGTAGAAGAGAAAAACTACTCTGATGGCTCTGAAACATCATCAGAATTTACTAAAATGCAGGAGGACTTAGTTCATATTGCACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'8-16,'8-13,9-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.600 C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCTGTTACAGAGCATGG
R:
TGATGTTTCAGAGCCATCAGAGT
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]