DreEX0052770 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21535436-21539762:+
Coord C1 exon
chr16:21535436-21535539
Coord A exon
chr16:21537998-21538090
Coord C2 exon
chr16:21539603-21539762
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATATATTTTACTTTGTGCAGGCT
3' ss Score
5.7
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
AACTGTCTGTATGCGAGGCTCAGTTGCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACATACTCTGCCCCAGCAATCAACGCTCTGCAG
Seq A exon
GCTTCAACATATGACAGCCCAAAAAAAGAGAAGAGACATCCCAGAAAATGGCGCCCTAAGAATTATGGGAAAGACAACAAAACAACCCTGCAG
Seq C2 exon
GTACCAAGCTGTATCTCGGCAGGCTCTGTACGTCTCCATGCATCCAATCCCAACCTCTCTTCAGTAGACCTGACCACTGAGAAGACCTATCATGAACCTCTGGACTCTCCTATAGACGTATCCAAACTGCAGGAAGACTTCTGCCGAGTCGCAAACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.742 C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCGAGGCTCAGTTGCTG
R:
GGTCTTCTCAGTGGTCAGGTCT
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]