RnoEX0062509 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80080131-80081658:-
Coord C1 exon
chr4:80081555-80081658
Coord A exon
chr4:80081267-80081359
Coord C2 exon
chr4:80080131-80080287
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTTTTCAAATGAAGGGT
3' ss Score
6.75
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACTTGGCACACTGCCACACTTATCTGCTGGAGATGAGCCAGCTCTTAGAAAGCATGGACGTCTTGCATCGGACATACTCGGCGCCAGCTATCAACGCCATCCAG
Seq A exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAGCGCTCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAATGCTGCAG
Seq C2 exon
GTCCCTAAACCTTTTTCTGGCCCGGTGAGACTGCACTCCTCCAATCCTAACTTGTCAACACTGGACTTTGGAGAAGAGAAGTCTTACTCGGATGGTTCTGAAGCCTCGTCGGAGTTCTCCAAGATGCAGGAGGACCTGTGCCATGTCGCCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.645 C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGCATGGACGTCTTGCA
R:
CGACGAGGCTTCAGAACCATC
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]