HsaEX0044911 @ hg19
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24901232-24903218:-
Coord C1 exon
chr7:24903115-24903218
Coord A exon
chr7:24902819-24902911
Coord C2 exon
chr7:24901232-24901388
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTTTGAAACAAAGGGT
3' ss Score
3.23
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACCTGGCGCACTGTCATGCCTACCTGGTAGAAATGAGCCAGCTCCTGCAAAGCATGGACGTCCTGCATCGGACATACTCGGCACCAGCTATCAACGCCATCCAG
Seq A exon
GGTGGATCTTTTGAAAGTCCCAAAAAGGAAAAAAGATCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAACACTGCAG
Seq C2 exon
GTCCCGAAACCTTTTTCTGGCCCAGTAAGACTACACTCCTCCAATCCTAATTTGTCAACACTAGATTTTGGAGAAGAGAAAAATTATTCTGATGGCTCTGAAACCTCATCAGAGTTTTCTAAAATGCAAGAAGATCTGTGTCATATTGCCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.871 C2=0.502
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGCCAGCTCCTGCAAA
R:
TGAGGTTTCAGAGCCATCAGA
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)