HsaINT0118649 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24901232-24903218:-
Coord C1 exon
chr7:24903115-24903218
Coord A exon
chr7:24901389-24903114
Coord C2 exon
chr7:24901232-24901388
Length
1726 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCCTTTGGTGTTACTTCAGGTC
3' ss Score
8.03
Exon sequences
Seq C1 exon
ACCTGGCGCACTGTCATGCCTACCTGGTAGAAATGAGCCAGCTCCTGCAAAGCATGGACGTCCTGCATCGGACATACTCGGCACCAGCTATCAACGCCATCCAG
Seq A exon
GTGAGCCGGACTCCTCTTCTGTTGACATTCTGGCCCTCTTCTGCTTTCCTTTCTCCTCCCAGCCTTTCACTAACAGTGGGATGCTGTGGTCAGTTGCTTCAGCCAAAGTCAAGGGGATGGAGGTGGTCACTTTGCTATGCATTTATCCTTGTCGGTTTGGTGGACTTTACTGTCTGTGCTCTCTTTCCTGTTTTGAAACAAAGGGTGGATCTTTTGAAAGTCCCAAAAAGGAAAAAAGATCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAACACTGCAGGTAACCATTGCTTCCCCTGACAGACTGGTTTCTTCATTGGCCCTGCTCTGCATGCCGTGTGCCAGCAGCTACCTTGACTCAGCTAGGAGAATAGATGAGTGAATATTCTGTAGTTGTTCTTTCCAGTGTCCTCTGTAGCGAGATGAATTGAATCACTTAGATTATCTGGGTGCTAGGATAAGCACATAATGGATCGTGGGCAAGGGAGAGAATTTTTTCTAAGGGAAAAAGGGTGTGAGGTCGCAGGGACTGCTGCCATTTCTAGGGCTTTTGGTTTCCCCACCTTCACTGTTGAGCCTGCCTGTGCTCTTCCCTGCTTGTGTTTGTGCCTTGTTTTGTGGCTGCAGTTGCTGTGTGCTGTGACCTGTGTCTTCCGCTGATGCTCCATGGATTTGTCATCCCTCTAAGCCCACAGGCCTGATTCTCTGGGCACAGGACATGGTGTAGATTCTCCTTGGCCTCTTATCTCCAAACTCCCAATCCCTCATCCAGGATTCACTGTGTCATGCTAGGAGCTTTCCCAATGCACAGCTAAGCCACAGGCCAAGATTTGCAGCTTAACTGTTGCATATTAATTGCAACAGTTTTAGAATCAACATAAATCTCAAGCTTTTGGTTAGGTCACCTGATACACTTGTGTACACTCTTTGGTTCAAAGTAGTTTATGGACTGAAGATAAGCACTTTGGAAGTAAAGAATGTTCCATGTACAAATGAAGGTCATTTGTTTTGTAGAAGCCCTAGGTGCAAAGAAAAGCATTTTAAACCTATCCATTACTAACCGCCTGGATACATGGATGATTATTGCCAGGAGGAAGGAATTGAGTATAAATGAGAAAGCCTGGCAGCTTTAGCTGTCATTTTCAACCTATAGCTTTAATGCTTCTATCATTTCCAAAAGAATATGTGATTTCTCACCCATTTTTAGCTCACAAGAAGCAAGTTTCTGTGGAAAGTGTTGTCTTGAGTTCTCATTTTTTAAAATAAGTTATCACTCAGTAGAAAGACCTACCTAGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCTGAGGCGGGCAGAACACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGCTGTGAACTCGGGAGGTGGAGCTTGCAGTGAGCGGAGATTGTGCCACTGCACTCCAGCCTGGGTGGCAGAGCGAGACTCCATCCCCCCCAAAAAAAAAAAAAAAAGACCTACCTATAAAATGTTTTGTATTTGTATTACCATGTTTCAATCTTAGAATCAAGTAAATATTCTAAGCAATCTGCATCTGAAAAGAAATATCTCCCTTTGGTGTTACTTCAG
Seq C2 exon
GTCCCGAAACCTTTTTCTGGCCCAGTAAGACTACACTCCTCCAATCCTAATTTGTCAACACTAGATTTTGGAGAAGAGAAAAATTATTCTGATGGCTCTGAAACCTCATCAGAGTTTTCTAAAATGCAAGAAGATCTGTGTCATATTGCCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_145322:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.502
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGCACTGTCATGCCTA
R:
TGGGCAATATGACACAGATCTTCT
Band lengths:
254-1980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)