GgaINT0097797 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31604016-31604883:-
Coord C1 exon
chr2:31604791-31604883
Coord A exon
chr2:31604173-31604790
Coord C2 exon
chr2:31604016-31604172
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
ATTTTCTGTTATCCTTACAGGTG
3' ss Score
12.58
Exon sequences
Seq C1 exon
GTTGGACCTTTTGAAAGCCCAAAGAAGGAAAAGCGAGCACATAGGAGGTGGCGATCTAGAGTTGTTGGGAAAGAGGCTAAAGGAACATTACAG
Seq A exon
GTGACTTCTGTCCTTTCAGTCGCCTATCTTTTCTTCAGTTCTTACTTACTGATAAATTCTTGGCATAACCAGTTTAGGAAATAAGAATCCTTTTGAAGTACTGTCCTATGCTGACTCATTTTATGCAGTAATATAATAGATGAAACACGAACATGTCCTTGTTGAAATCTGCAATAGGATCTGTACTAATTTGTTCAGGAGATAAACCTGTCTCTCACCCATTTTTCTAGTTTGTCTCCAATTAGGGGTATGGGGAGGTGTATCTGGTAGTTTTTTCTCTTTTTTTAGCAGCACCTACTTTTGCAAATTTCCAGGTAGTTTTGCTCATATTTGCATCCAGTGTGCTTGTCATTAGATACTTACAAGCAGAGGAAAAAATACTATTGCAAATGTTACAACTCTCAATGGGCTCATTTCTTGGAGTTTTGCCAAATCTCCAACTACGAGATCTTGGGAAAAATTTTATCAGTGTTTTCATCTATTCCAAGCCTATTGGTAACTGACAGTAGTTCTATTAGCTTTTGTGTCCCAGATATGAACAATTTAAAATAAAATTCTTTACAGTTTGGTTAAAAAAACAAGACAGACACAATCACAAATTTTCTGTTATCCTTACAG
Seq C2 exon
GTGCCTTCAGTGTTTTCTGCCCCTATGAGACTACATGCTTCCAATCCTAACTTATCTACAATAGATTTTGTAGAAGAGAAAAACTACTCTGATGGCTCTGAAACATCATCAGAATTTACTAAAATGCAGGAGGACTTAGTTCATATTGCACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGACCTTTTGAAAGCCCA
R:
ATGTGCAATATGAACTAAGTCCTCCT
Band lengths:
246-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]