GgaINT0097796 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31604791-31605129:-
Coord C1 exon
chr2:31605023-31605129
Coord A exon
chr2:31604884-31605022
Coord C2 exon
chr2:31604791-31604883
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GTCTTGCTTGTTATTAAAAGGTT
3' ss Score
6.26
Exon sequences
Seq C1 exon
CAGATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
Seq A exon
GTTTGTTGTTTAAAAACCAAAAAATCCTTTTTCCCTTGCTATTCCAAAAACCAACCCGAATTCTAAATGATCAAGTTATTTATTCTCAACTTTGCTACTTTTATGACATTCCATGTTTTGTCTTGCTTGTTATTAAAAG
Seq C2 exon
GTTGGACCTTTTGAAAGCCCAAAGAAGGAAAAGCGAGCACATAGGAGGTGGCGATCTAGAGTTGTTGGGAAAGAGGCTAAAGGAACATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCTCTCCACTTGTCATGCA
R:
TGTTCCTTTAGCCTCTTTCCCA
Band lengths:
194-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]