RnoINT0105782 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80081267-80081658:-
Coord C1 exon
chr4:80081555-80081658
Coord A exon
chr4:80081360-80081554
Coord C2 exon
chr4:80081267-80081359
Length
195 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TCTCCTGTTTTCAAATGAAGGGT
3' ss Score
6.75
Exon sequences
Seq C1 exon
ACTTGGCACACTGCCACACTTATCTGCTGGAGATGAGCCAGCTCTTAGAAAGCATGGACGTCTTGCATCGGACATACTCGGCGCCAGCTATCAACGCCATCCAG
Seq A exon
GTCAGCCTGCCTGCTCCTCAGTTCACCCTCTGTCTTCTCTTGTTCCCCACATCTGACTAACATGGGATGTCCTCTATCCAGTGCCTTAGCCCAACTCGAGGGGATGGCTGTGGTCACTTTGCTGTGCGTCTGTCCCTGTAGTTTTGGTGGATCTTACTGTCTGTGCTCTCTTCTCTCTCCTGTTTTCAAATGAAG
Seq C2 exon
GGTGGAGCTTTTGAAAGTCCCAAAAAGGAAAAGCGCTCGCACAGGAGGTGGCGGTCCAGAGCTATTGGCAAAGATGCTAAAGGAATGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCACACTTATCTGCTGG
R:
CTGCAGCATTCCTTTAGCATCT
Band lengths:
188-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]