BtaINT0106003 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18492888-18493816:-
Coord C1 exon
chr2:18493729-18493816
Coord A exon
chr2:18493142-18493728
Coord C2 exon
chr2:18492888-18493141
Length
587 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGC
5' ss Score
5.06
3' ss Seq
CATCTTTCTCCTTCTTCTAGTCT
3' ss Score
9.73
Exon sequences
Seq C1 exon
GCTTCAGATGATGAGTCTTACATCAGTGATGTGAGTGATAATATATCTGAAGACAACACCAGTGTTGCAGACAACATCTCTCGGCAAA
Seq A exon
GTATGCATCCTTTGAGTTTCGAGGTTGTCCTGTCTACATGCCAAATACAACGCTAATGATTCAATGAACAATCATTTTGGCCCCCTGGCTAATTGTTCCTTTTGTAGCTTATTGTTCAATAAATTTTATATTTGTATAATCTGGTGAAAATGGTTGAAAAATTTGTTAGGGAGAGGATTAAGATAAAAAGTTTAGTTCTTGCCCAAACCAAAATTTTGAGTCCTTTGTAATTAAATGTATTTATATTTAGTTTTTAAAATTTTTACTTGTTTAGGATTTCCTTGGCAGTCTGGTGGTTAAGACTTTGAGCTCCCAAAGCAGGGGGTGTGAGTTCAATCCCTGGTTGGGGAACTAAGATCCCACGAGTCATGAAGCAACACCAGAAAGAACTATACATTGATGTTTTGTGCATTTATCAGCAACCTTGTATTGAAATAATTCTGTTCACTCTTGGGAGAGTGTAAGGAAGGCTTAAGAAATGTATCACAGTCAGAATTATTTGAAAGGGTTCTTTCCCTCCCAGGTTTTGGGAAATCAGAAAAGCAAAATATCTTTCACTGTGATTCTCATCTTTCTCCTTCTTCTAG
Seq C2 exon
TCTTGAACGGGGAACTTACGGGAGGAGCCTTCCGAAACGGACGTCGAACATGCCTGCCAGCTCCCTGTCCCGACACCAGTAACATTAACCTGTGGAATATATTGAGGAACAACATTGGTAAAGACCTGTCTAAAGTCTCCATGCCTGTGGAGCTAAACGAGCCACTCAATACTCTGCAGCATCTCTGCGAGGAAATGGAATACAGTGAGCTCCTGGACAAGGCTTCGGAAACTGACAGTCCCTATGAGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(15.7=64.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGATGATGAGTCTTACATC
R:
CATGCGCTCATAGGGACTGTC
Band lengths:
342-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]