DreINT0108866 @ danRer10
Intron Retention
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1402437-1404797:-
Coord C1 exon
chr9:1404710-1404797
Coord A exon
chr9:1402691-1404709
Coord C2 exon
chr9:1402437-1402690
Length
2019 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
AGCTTGTGTTTCTCCCTCAGTGC
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCCTCTGATGATGAGTCTTACGTCAGTGATGTGAGTGATAATATTTCCGAGGACAATGCCAGCGTCACAGATAACGTTTCCAGACAGA
Seq A exon
GTAAGATCCTCTCCATTTCATTAGAGCAAGATGATGTCATTGTGGGACACACACACACACACTCTCTCTCTCACACACACACACTTGTAAAGCTACATCAGTTTGTTTTCTTCATAGAGACTCCAAAAAGTGTTCCAACATGGTCAACATTTACTGGTATTGCTATACGTGTGGGGACATTTGGTACCCATGACATAATGAATAAAAGAATACAAAACACACACAGAAGAACTTGTTTATTGTTTATTGTCTATTATTATTAAGTCAAACTAAATTTGGGGACACTAAAGTTCCCCTCTTAGTTTTTTATTTATTTATTTTAAATTGAATGTTTTCTATTTCAATTTTTAAAAAAGGGATCATTGCTCAATTCTAAGAAAGAGGGGGAAATAGTTATTCAAAACATCACCATTTTTCTCAGAAAGCATATTTCTAATGGTGCTTTTGACTTGAAATTATCACCAGATGTTGGGAACAACCAAAGAAATCCTTATATACAAAGAAAACATTATTAATTAGTTTACAAACGAAGTTCTGTGTAATAAAAGGAAATAATGCAGGGAAAAAATATTGAACACATGAAGAAAGGGAGGCGTAGAAAGCCCAGACAGCAGCTGAAATCTCTCAGTAGTTCTTCAGCAAGCCTCTGCCCTTCCTCAGTGTAAATGAACATCAGCTGCTTCAGTCCAACATCTACATCAGCAGGAAGATGAAGATGAACCCAGGGTGGACATTTCAGCAAGATAATGATCCAAAACACAGCCAAGGAGACTCTCAGATGCTTTCAGAGAAAGAAAATCAAGCTGTAGAATGGCCCAACCAATCACCTGAGCTCAATCCAATAGAGAATACAGATAAAGCTCAGATTTGACAGACGAGACCCACAGAACTATCAATATTTTGATTAGTTGAAGTCTGTGAAAATGCATGTGACTTCGTTCTCCATATGAGAGGTGTCTTTAAGCTGCCTTCACCAAATGAACTTTTATATAAAGTATTACATGTTTCAGTTGGTCAGAACTTTCTCTTTGTGTTATTCTAGTATTACTACACAGAATTCATTGTTTTCTTTTATTTAATTTTAATGTTTATGTATTGTTTGGGCTTTTAACAAAATCTGCTTCAATTCCATGCCAGCAGCTCCCTTAGAAATGTTATTCCCAGGAAAATCATGACAATAGCCCCTTTCACACATACAGACCTTTCCGGAAAATTACCGGCAATTTTCCGGAAAGGTTGTATGTGTGAACAGGTCCTTTTTGAAAATACCGGTAAATTCGTTTTGGCTATTTTCCGGAAAGAGAAGTTGTAACATTACCGGTAATTTGCCGGAATGCTGCGCTGTGTGAATGCAGATGGAAGATTGCCGGAAAGAGCGCGTGCACGTCTAGAACGTGCTGACGTGAGACGTCTACTTTAGCCAATCACAACAGTCAGACGCATTCACGTCCGCACGGTTTATGAGAATAAAAGCCTTTGAATATTTTTCCAGACACATTTAGCTGCTAGAAGTTAGTCAGATAACGTTTATATGTTCTTCTTAATGCCAACTGTGTAAATAATCATCGATGAGATGCTTATGATAAGCCGCTGTTTGTTTACCTTCAAGCTTTGCGTGTGCCTGTGAAAACAGCCTGTGAGCGCCTGCACACGCACATATTATGAGAATCTCGACATGCGAAAGTGATCCTGCGAAAGTTGTTCACAATATTGATCATCCACAGAGTTTGTAATTTAGTCAAATGTTTACAAACACAAGCGCAGCCGTTTAAAGCTCATTTGTGGTGAATGATGTCAGAATTTACCGGTATTTTGGAATGGATGTGTGAATGCTCTTTTCCGGAAAATTTCCGTAACGTCCTCGCCTGTGTGAACAGCGCTTTTTTCAATATACCGGTAAAGTTGTTCCGGAAATTTTCCAGATATTTACCGGTATCACTGTGTGAAAGGGGCTTATAACTAACCCTGACTGCAGATATTCAGTATCATGTAGTGTGTAAGCTTGTGTTTCTCCCTCAG
Seq C2 exon
TGCCTAATGGTGAGCTGGCCAGCAGTATGTTTCGTAACGGCAGACGTCCGTGTCTCCCGGCTCCTGCTCCCGACACCTCCAACATCAACCTGTGGAACATCCTGAAAAACAACATCGGCAAAGATCTGTCCAAAGTGTCCATGCCGGTGGAGCTGAACGAGCCGCTGAACACGCTGCAGCACATGTGTGAAGAACTGGAGTACACCGAGCTCCTGGATAAAGCAGCTCAGACTGACGACCCCTACGAGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730:ENSDART00000124777:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(15.7=64.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]