HsaINT0118682 @ hg38
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178382420-178383277:+
Coord C1 exon
chr2:178382420-178382507
Coord A exon
chr2:178382508-178383023
Coord C2 exon
chr2:178383024-178383277
Length
516 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGC
5' ss Score
5.06
3' ss Seq
TGTGACTCTCCTTCTTCCAGTCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCTTCAGATGATGAGTCTTACATCAGTGATGTGAGTGATAATATATCTGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA
Seq A exon
GTATGCATCATTTGAGCTTCCAGGTTGTTCTATCTACATGCCAAATTGCAACACGAAGACTTAATGAACAGGCATTCCCCCTCCCACGCCACCCCCACCCCTGCTAATTGTTCTTTTGGCAGCTGATTGTTCAATACATTCTATTTTGTATGATCTCTTGAGGTAAATGGTTGAAAAAATCTGTTAGGTAAATAGTTAAGAGAAAACGTTTTTCCTCTTTCTCAAACCAACAGCTTGAGTCCTTCTTATTAAATGTATTTAATTTTTTAAAACTTAGCCTGTCTTGTCTTGAATGATATTTGAGTGTATCTAATGCCTTATTTATAAAACTATACACTGTTGTTTTCTGCATTTATTAGCAACCTTGCATTGAAAGAATTCCATTTACTTTTGAAAAGATATAATGAAGACTCATGAAAGGTCTCAAAATCAGATTTATTTGAAAGTTATTTCCCTTCTTGATTTTGTGAAATCAGAACAGCAAAGTGTCCTTCACTGTGACTCTCCTTCTTCCAG
Seq C2 exon
TCCTGAATGGGGAGCTTACAGGAGGGGCCTTCCGAAATGGGCGTCGAGCATGCCTGCCAGCTCCTTGTCCTGACACCAGTAACATTAACCTGTGGAATATCTTGAGGAACAACATTGGTAAAGACCTGTCTAAAGTCTCTATGCCTGTGGAGCTAAACGAGCCGCTCAACACCCTGCAGCACCTCTGTGAGGAAATGGAATACAGCGAGCTCCTGGACAAGGCTTCGGAAACTGATGATCCATATGAGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156:ENST00000190611:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(15.7=64.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGATGATGAGTCTTACATC
R:
CATGCGCTCATATGGATCATCAGT
Band lengths:
342-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development