RnoINT0105811 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63438717-63439511:+
Coord C1 exon
chr3:63438717-63438804
Coord A exon
chr3:63438805-63439257
Coord C2 exon
chr3:63439258-63439511
Length
453 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGC
5' ss Score
5.06
3' ss Seq
TACTCTTCTTCCTCTCCCAGTCC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GCTTCCGATGACGAGTCCTACATCAGCGACGTGAGTGACAACATATCTGAGGACAACACCAGTGTCGCCGACAACATTTCTCGGCAAA
Seq A exon
GTATGCATCGTTTGAGTGACCAGGTTGATCTATCTGTGGGCCACATTCTAACCGTGGTGAATGGGTAGCCAGCCATCCCCTCCTTCCCCTCAGCAGTTATTCATAGCTTCTCTTTTGCATAATCTATCCAGGTGGCAATTATAAAATCTGCTGGGTATGTGGTTAAAGGTTTACCTCTGATTATGAAAAATCCCTCCTCTGAAATACGCACTCACACACACACACAGGACTTTGCTTTCTTAAATAGTATTTGAGTACATTTGAAACTTTGCTTAAAATCCTACCCTGACGCTTTGAGCACTTGTTCTCAAATTTATATAGAAATCATCCTGTGTGTTAATGTGATTAGCTGTATTACAGTCAGAATCCCATGAAAGAGTTCTCTCTTCTGCTCTGATGTTACGTAGCCAGAATGGGGGAGCATCACTCTCTCTACTCTTCTTCCTCTCCCAG
Seq C2 exon
TCCTGAATGGGGAGCTCACAGGAGGCGCCTTCCGCAATGGCCGTCGAACCTGCCTGCCTGCTCCTTGCCCGGACACTAGTAACATTAACCTGTGGAATATCTTGAGGAACAACATTGGCAAAGACCTGTCCAAAGTCTCCATGCCCGTGGAGCTCAACGAGCCACTCAACACTCTGCAGCACCTCTGTGAGGAAATGGAGTACAGTGAGCTCCTGGACAAAGCCTCGGAGACCGACGACCCCTATGAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0123713=Oxysterol_BP=PU(15.7=64.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCGATGACGAGTCCTAC
R:
CATCCTCTCATAGGGGTCGTCG
Band lengths:
342-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]