BtaINT0106012 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18476915-18478462:-
Coord C1 exon
chr2:18478340-18478462
Coord A exon
chr2:18477082-18478339
Coord C2 exon
chr2:18476915-18477081
Length
1258 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TGATTTGTATATTTTCACAGAAA
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATTTTTGGAAGAAGGAAACTTAGAAGCTGCAGCAGCAGAGAAGCAAAGAGTAGAGGAACTCCAGAGATCTCGAAGACGATACATGGAAGAAAACAACCTTGAACATATACCAAAATTTTTTAA
Seq A exon
GTAAGTCAGTTTATTCCCGCAACAAGTTCATGTTTTGCAAATGGTTGCCACAAGCAATGAAAAACTTAGGGTAAGAAGAAAATGAGGGATAGTTTCATGTCCAGGGCACTTTGAGGTAGAAAATTAAACTGATTTTGGTCACTGGTACTTGGCAGTGAAAATACTGAATCAGATTTTTTGGTCTCGTGAAGTTTGTAGCCACAGAAATAAATTCTGCTGGACAGCTCTTTTCTTTTCATGGGCAGCAGTAAAGAGTGAGGGTCCTGCCCAAAAGGCTCCTTATCCTCCAGCTATATCCTTTTGAATGGTAGAAACTTGTTCCCACTCCCTCACCCAGAGATAAGCTGGGACCCTGTTGCCCACAGGGTCATTCTGGCTTCATTAGTATTTAATTTTACTTCTTTCATATGGAGGGGCTTCCCTGGTGGCTCAGACAGTAAACAATCTGCCTGCAATGTCAGAGACCCGGTTTGATCCCTGGCTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCTACAGTCCATGGGGTCGCAAAGAGTTGGACATGGCTGAGTGGCTGACACTAACACCCTCTATCATATAGAGCTTTGTGTCCATTCAGATTTGACCCTTCTGTGGTATGATCATGGTGATTATTACAGGATTATTTGAGGGATTATGAATACATCACACAGACTAAGCTGTGGTTTTCAGATCCATCTGCCACCCTTTAGAATCAGGACACATCAGCTCAGAATAACCTCTTACCCCTTTTAGCTGCCCTCTCCTGGCTGTCCTGGACCGGAACTGCAGTCCTGCTCTTTAGATGTTGAAAGTGTCTTCACTGGGCCTGGATCCTGCAGAGGCTATTACAGCTACTGAGGCTGTGTACCTTCCCCGTCAGTGAAGCAGAGAAAATTCTTGTGGGTCTGGGGTCTAGTTACGGTGTTTGTACGTGCTTTGGGCCCCTTCACTTTCTAGTCCTGCCTTGAGGTGACTTATCCCCGCTCTTAGCCCCTCTCCCTAGAACCCTGCCCACTTCCATTTCACAACAAAAATGAGTTTATTTCTGGTCAAAAATAGTCAAATCATCAGCCAGCAGATAGAATGTTCACTGGCTTACAAAGTACTGATTCTAATACACACCTTATCTACAGGAGGGGGTCCAATTATCAGATCACGTGAATGAGACTTACGTCTAATGTTGATTTGTATATTTTCACAG
Seq C2 exon
AAAAGTGATTGATGCCAATCAAAGAGAAGCCTGGGTTTCTAACGACACCTACTGGGAGCTGCGAAAGGACCCTGGTTTTAGCAAAGTAGATAGCCCTGTTCTCTGGTAAACGGGAAACGTAGAGCTAGCCGACATATCACGCTCTGAATGAATAAATAACTATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAACTTAGAAGCTGCAGCA
R:
AGTTATTTATTCATTCAGAGCGTGAT
Band lengths:
272-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]