RnoINT0105820 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63449139-63451037:+
Coord C1 exon
chr3:63449139-63449261
Coord A exon
chr3:63449262-63450291
Coord C2 exon
chr3:63450292-63451037
Length
1030 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TGACTTTTGTATTTTCACAGAAA
3' ss Score
8.93
Exon sequences
Seq C1 exon
ATTTTTGGAAGAAGGGAACCTAGAAGCTGCAGCTGCAGAGAAACAAAGAGTTGAGGAACTCCAGAGATCGAGAAGACGCTACATGGAGGAAAACAATCTTGAGCACATACCAAAATTTTTTAA
Seq A exon
GTAAGTCAGCCATTCCCACAAGTTTGTGTTTTCTGTGACCACGAACCATGAGGGACTCGTGGTAAAGAGAAAAAGAAGGGTGCAGAGTGTCTAGGAACGTAAGCAAATGTGGGTAACTTGTATCAGACAGTGAGAGAACTGAATCCGATTTTGTGCTTGTAGAAGTTAGTGACTGTCACCGGCCAGCTCTTCTCAATGGTCTTTTCTTTCTGTGGACAGTGAAGGAGCTTACCAGAAGGCATTTCTCTTTTTCTGGACCCTTTAGGGTAGCAGGAAGGTGTTCCCACTCCTCACCCAGGCAGTGGCTGGGGCTCTTCCCCAAGGGCACCATGACTTCATTAGGATTTGATTTTATTTCTGTCACACAGAGCTTTCCTCTGCTCAGATTTGGCCCCACTGTGGTATGACCAAAGACGATTACTCCAGGATTATTTAAAGGATTATATAAACATCACACTGATGAATCTGTGGTTTCCAGATCTATCCTCTGCCATCTTTCTGAGCATGCACAGAAAAGGGTGACAGTCTCCCCCTTAGACCTGCCATGTTGTGATCACCGGAAGTGCAGACCCACTCTTCAGAGGTTTCAGTGTGCCCCTCAGAGGGCTGCAGAGTGCCCTTTAGGAGGTCTACAGTGTTCTCTTCAAAGGGCTGCAGTGTGCCCCTCAGAGGGCTGCAGGGCTGCAGTGTGCCCTCCAGACATGGGCTTCACAGGCCTTTGCAGCTACTGGTGTTACACTGTTCCTGGGAGGCAGCTCTTCCTTACAGTGCTTACTGAGCTGTGTTTGGGCCTCTCTACTTTCTCCCCTTGCCCAGAGGTGATTAATGGTCATTGGTTCCTGTCCTTAGTCCTTTTCCTTCTTTGTTTTCTTTCAATCATTTAGTGATTGAAAACAGTCACTTCCATTGTCGACGTATCAACTGTCAGCAGATAGGACACCAATTGTATACAACATACATGTGAGAAAGAACTCAGTTCAGGTGACCTTGACGTACCTTGTGGCTAACACTGACTTTTGTATTTTCACAG
Seq C2 exon
AAAAGTTATTGACGCAAATCAAAGAGAAGCCTGGGTTTCTAACGACACCTACTGGGAACTTCGAAAGGACCCTGGGTTTAGCAAAGTAGACAGCCCTGTTCTTTGGTAAACTGGAGACGTAGAGCTAGCCAATACACCACACTCGGAATGAATAACTATGCACAATTATGTTTCTTATAGCTACGCGTGGTTTCTGGGTCGACTGAAAACCTCCCATTTGCTTTTCTATTCATCTTTATAATGGATTTTCAAAAGTGCATTAGACAAGGCTCCTAACCACTTTTGGATCCTTTCTGTTTTGCTGCAACCATATTCCTTAAAACAAACAAACAAATAAATAAATAAAACCCATGCCCTCCTCCGAAAGCAGACTAAAAGAAGGAGAATATACAATCCAAAGTCCGGAGAGCTGGAAAAGAAGGTGAAAAACCTGTACTGTGTGCTTCAAGCGGATCAGGAGAGTCTAAAACGATACACAGACCACATGTTCCGTCTGCTGTCCGAATACGTCATCCCGAATCCTTAGGAGCTCCTGGGCCATAGTGGGTTAGTTCAGACTTGAAGTGTGTTCTTTTGATGTGGTGTGCTTGTTCTCAGCCTCGTCAGAATAGACGTTGATGCTTCCCAAAACCCATCCCATCTTTACAACATTGTTCATGCCTTAAGAAACGCAGAGATGTACAATAAACTGTTTTTTAAATGTGTGCTCATAGGTGTATGTGAAGGGCAGATCGTTAGAATCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGATCGAGAAGACGCT
R:
CCAAAAGTGGTTAGGAGCCTTGT
Band lengths:
350-1380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]