MmuINT0113723 @ mm10
Intron Retention
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76594764-76600647:+
Coord C1 exon
chr2:76594764-76594886
Coord A exon
chr2:76594887-76595873
Coord C2 exon
chr2:76595874-76600647
Length
987 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TGATTTTCATATTTTCACAGAAA
3' ss Score
8.06
Exon sequences
Seq C1 exon
GTTTTTGGAAGAAGGGAACCTAGAAGCCGCAGCCGCAGAGAAACAAAGAGTTGAGGAACTCCAAAGATCGCGAAGACGCTACATGGAGGAAAACAACCTTGAACATATACCAAAATTTTTTAA
Seq A exon
GTAAGTCAGCCATACCACAAGTTTGTGTTTTACTAATGGTTGCCACAGAACAGGAGGGACTCGTGGTAGGGAAAAAGAAGGTTGCAGAGTGCCTAGGGAACATAAGCAAATGTGGGTAGCTTTGCATCAGACAGTGAGAATAATGAATCAGATTTTGTGCTTGTAAAAGTTAGTGACTATACCGGCCAGCTCTTCTCAATGGTCCTTCCTTTCTGTGGACAGTGATGTAGAGGAGCTCACCAGAGGACATTTCCCTTTCTCTGGACCCTTTGGAGTGGCAGGAAGGTATTCCCACTCCTCACACAGGCAGTGGTTGGGGCTCTGCCCCCAAGGGCACCGTGACTCCATTAGGATTTGATTTTATTTCTGTCACACAGAGCTTGTGTCTGCTCAGATTTGGCCCCACTGTGGTTAGACCAAAGATGATTACTACAGGATTATTTAAAGGATTATATAAACATCACACAGATGAGTCTGTGGTTTCCAGATCCATCATCTGTCATCCTCCTGAGCATGCACAGGGTAACATCCCCCCCCCCCCTTAGAGCCATCTTCTCAAGATCACCCTGTGCTGCAAGTGCAGACTCACTCTTCAGAGATTAGCAGGATGCCCTTCAGGAGGCCTACAGTGTTCTCTTCATAGGGCTGCAGTGTGCCCTTCTGACATGGGCCTCACAGGCCTTTGCAGCTACTGATGCTGGTTGCACTGTTCCTGGGAGGTAGCTCTAACTTACGATGCTTACAGAGCTGTGTTTGAGCCTCTGTGCTTTCTCCTCCTTGCCCAGAGGTAATTAGAGGTCATTAGTTCCGGCCCTTAGTCTTTTGGTCTTTTTCCTTCTTTCTTTTAGTTCAATCATTCAATGACAACAGTTACTTTATTTCTGGCCAGAAATTTCCAACTTATCAACTGTCGGCAGATAGGACACTATTTGTATATAATACCCTTGATGTTATTTGTGGCTAACATTGATTTTCATATTTTCACAG
Seq C2 exon
AAAAGTTATTGATGCAAATCAAAGAGAAGCCTGGGTTTCTAACGACACCTACTGGGAGCTTCGAAAGGACCCTGGGTTTAGCAAAGTAGACAGCCCCGTTCTTTGGTAAACTGGAGACATAGAGCTAGCCAATATCCCACACTCGGAATGAATAAATAACTATGCACAATTATGTTTCTTATAGCTACGCGTGGTTTCTGGGTCGACTGAAAAGCTCCCATTGGCTTTTCTATTCATCTTTATAATGGATTTTCAAAAGTGCATTAGACAAGGCTCCTAACCACTTTTGGATCCTTTCTGTTTTGCTGCAACCATATTCCTTAAATAAATAAATAAATAAATAAATAAAACCCATGCCCTCCTCGGAAAGCAGCCTAAAAGAAGGAGAATATAAAATCCAAAGTCGGGAGAGTCAGAAAAGAAGATGAAACTGTAACAGGCGCTTCAAGCTGATCAGGAGAGTTTTAAATGATGTACAAACTACACGTTCCGTCTGCTGTCTGAAAGCGTCATCCCATACCTTAGGAGCTCCGGGGCCGTAGTCGGTTAGTTCAGACTTGAAGTGTGTTCTTTTGATGTGGTGTGCTTGTTCTCAGCCTCGTGAAAATCGACAACGCGATGCTTCCCGAAACCCACTCCATCTTTACGACATTGTTCATGCCTTAAGAAATGCAAAGATGTACAATAAACTGTTTTCTAAATGTGTGCTCATAGGTGTATGTGAAGGACAGAGTGCTGGCGTGATTCACTTTCTTGGTCAGAAGGTTGATTCAGCTGATAGAAGGATTAAATGAGGGAAAAACACACTTTCCTTTGCTAAGTCAGTTCTGCTGTGGTGGATCTGAGGGGCAAGAGGGCTAAGGTACTGTATCCTAAGTTAGATCTCTGTATCCAGGTCGTTCTTTAAGTTCCTGTCCTATGTCCAGATAGTAAGCCATCCCTCCTCCGTCTGACCTCACAGTGTGCCCTGGTATTTGGCAAAAGTTGTATCTGATTTGGACGCCCGTCATCAGTGTTAAACTTCAGTAGGAAGTAACAAAGCCCAGTTTCTGCCTGGGCTGGGTGGTACCACAAAGCACACAGGCCATAGAACACATCCCTGGCTCATGCCCGCCACTCGACACTGTTGCGATTCCATGGAGAACGAAAGCTTATTTGCATTATGTAAATGGATCCTATGCATAATCATGTTTCTTTTTTAAAAAAAATCAAGCGGTTCCATATGATACACGGTTACATATTAAGCATCTACCTTGCTAAGGGCAGATATATAAAACTTAGGCTTAAAAAAAAGTAATCCATTCCAAAGGTGGGGTCAGGCAAGGTTTGATTTCAATCCTTGAGGTTTTGTTTTTCCTCCACGGGTACACAGAGGCTTTTGTAGGAAGCTTGCATTGGCGTTTTTAAGTTCTTGCATGTACATGACAATATAAACACCCGTATGTTTTTTAAAAAAAAATCTCTTAAGGGGGCTTCCTAGAGAATTAGAAACTTATATATATTTTATTGTTAGAGTTTTATTCTTAGATTCTTACCATCTGAATTTAAGTGTTACTTTAGACTCTGATAACAAGGTTAGTGACATTTTATATTTTGTTAAGAGGTATCTATCAATCTCGGTGTTATTTCTCCCCCCTCCCCGCCCCCGCAAAGTATTCCTAATAATGGCTAACTCACCATAAAACCCAAACCTTTTGTGAACATGGAGGGAAATCCAGAGTTTCCCCTAGATGGAGCAATATTTTAGTTATCCCCAAATTCATCTCCCCATTCATGTACACCATGCACACAGCTGTTAGTCATTCGAATGAAACTTCGCTCTCCAAAGAGTTCCCGAAGTCAGAGCCAGAGCCAGGCTTCCGCTTACACGGCTTTCTCCATGTGCTCCTGAGTCCTAGGTGACTCGCCCTGCAGTTGCAAAACCTTCCCCCGTGTCACGGACTACTTTTTTTCTCGGTTCAACCCGATGCTGTTTTATCAGTGCATCTCTAGTTATGTCTGATTTTATATTGAGTTAGGACTTAATTACAGTCCCGTGGACCTCCTCATAAAAGCTGGTTCTCCTCCAACTGAGAAAGCTTACAGTACAATTTAAAGTGGGTCTCGCCTGCACTTACTAGTGTCTGACGAAACAGTCTTACATCTGCCTAAGTAATAGAAGAGCCCTGCAGAATAGAGATGCCACAAGGAGGGACTGCGAAGGTGAGGTGATCAAAACACAATAGGAGATGTCCATTTAGTAAAGGACAGAAGGCCCAGGACACAGCAGGGAAGTAAAGACAGCTCCCAGGTTTGGATTAACTGAGAAGAAAGGAGAAACAACAGATGAAGCCTTTGTAGTCAGATAGTAAGGTTAAGATGACAAATAAGATAAGGTCAGATCTACCCGGAAACTCTAATAAGAATTTCAGGATGCAAACGAGAGAAGCATGGGATTAATTACAATCACATTGTATGGCATCCTCCATTTTGAATCTGTTTGGAGATTTTGGTTCCCCCGGGTGTGACCATTATGTTGTCAGGTCTCGTCTCAATCACGTCATCAGTTAGGCTTCAAATTCCCCCACCCCCACCCCAGCACCCGACTCACCCATCTCCAATGGAACACTCACTTGTCTTGCTGAAATGGCCTTGTCCTTTTTGTTCACACAGTGATTATAAAGAACTCTATTGAAATTTCATTTACATGACATTTCAGCTATTAAACCTAAATGACAAGAGGGTGGAGTGGTATAGCTTATTCTCTTGATAAAAAATGTGATGTAGCCCTTGGAATTTTACATAAACCACTATATTTGGGAGATAGTGGTTTTCTGTCAAAGGGCCGTAGGAAGGCTTAGTATGCCTGTGTTCTTTTCCATGCTTTATTTTCAAAGCTCCCTCCCCTCTGGCAAAATTGTCCTGAGAGTGACAGTGACCCTGAGGGGTTTGCCAGACTGGGCTGACTGGTCAGTACCAACCTTTGCTGAGGCTCACCAAAATTGGATCATTTTGATGCTGAATGCTGTTAACCAAGGTGTAAATGTACTCTTCAGTGTTGCTGATCTTTCTTATTTTTTAATTGTCATTATTTTTCTTGGGTTATTTTAAAATGATGTCCATGTTCTCTCCAGGTAGCTGTAAAAAATAAATAAAATAAACTTCATTTAAGATACCTGTTAGTGCTACATGTCAGTTGTATGTGATTGCAGGGTCAAATGTCATTCTTCTGCCTGAGGGAAACCAAGGAAATTGTGGTACAGAGGCCACCAACTTGTCAACTTCCCAAATCTTTTGTGCTCAAGCTCTTGATTCTTCTGGCCTTGTGTTATTCTGCATTAGCACTTACCAGTCATTAGATCCTGTTCTAATGGACTAGCATGGAGCTCAGAGAGGGAGAGACGCTCTAGGAAGGAAACCCTGATTAACGTGTTTAGTTTAGTAGTAAAGAACATTTTTTGTTACTCTTCTGTGGGTTTAATTATCCATCCTGTTTAATGCTGTTCTCTGTCATCCTAGAAAATAAAGCGTTTGTGGGAGCAGAGCTCCGCCCAGCAGGGGGCAGAGCAGATGTTTGCACTTGGCTCAGTATGTTATGAATGTGGCACAGTAAATAAAGTTTGTGTACAGAATATTAGTTTATTTCTATGAGAGCAATTATGTTCAGGATATATAAAAAATGTATCTAATTAAACCATTACGGATCTATTTTGTGCTCTAGAAATGTTCTTTTTTTTGGGTTGGGGGGAGTGTCTATAGAGCTAAAAGTAAAATGTTGATGTGTTCTCATGGGTTTGGTTTCGTCTCCCAAATGCTCCGTGGCTTTTGGGAAAGACTCCATATCACCCCAGGAATCTATCTTAATTGAGTTTGGTTTGTAAACACTTCTACTTTGAAAGTTGTGCATTGTGTGGCTCCTTCTCTGAAACAGAAACTAGCTTTATTAACAACATCTTCAGTACCTCTTCTGCCTGTCACGGAGATGTGGAACCTTTCTGCAGTGGCCGCTTTCAAAAAGAGAATGGCAAATTGCATTGGATGGGTTTGGCTTCATTCTTCTAACCTGGGATCTAAAGGATGGATAAATGCTGTGATGAAGTAACATGCCCTACATCCTAAGTAGATCAGGCCCTTAGGACAGACAGACAGACAGACAGACAGACAGACATCTGGCAGATGCCTCGTCTGGAAGAGAATTGGTGTTGTACTCTTGCATTGGCTTTTCAAAACAACAAGCTTGTCTCTCTATCCTCTGGTCCTTACAAGCAGAAGGGGAGATGCTGCTGGGTACCATGTCATTGTCTGTGAAATGGGCTGTCTTCATGTGTAATCTCAGTCATTCGGTATTAGAAACTGCTTCATTCATTTTCCTCATGAACAGTATTAATTCTTCATGAGTTAAAAGGTTCCTTATATACACATATTATGAGTTATTTTCCAAACTGATAGAAAAAAAAAAGTTAACCAAAAGTTCTCAGTTTCCATAAATTTTGTTTCTATCTGTACCTTCCTTTCCAAAATGAGTTAATTGTAAAGAAAAGGATATTAAATTTTTGGTAAAATAAAGTGGAATCCTGTGTGGGGTCCGTCTGCTTCTTCTCTCAGCATTAGATCAGATGAGGAAGGGAACTGAACTCTTAGACAGGACGATGATAAAATCACTGCTCCCTTACATGTCTGCTCTCCCTCAGTGTTTCATCTCAGGCCTTCGGGAACTAAAATGTTTGCTGTGCTTTTTAAAAAGCTGGATAAAAATGTTATATAATAAATGTCACACGTTGAAACTGATACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359:ENSMUST00000111929:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAAAGATCGCGAAGACG
R:
AGGAGCCTTGTCTAATGCACT
Band lengths:
344-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types