BtaINT0106575 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155156587-155157700:+
Coord C1 exon
chr1:155156587-155156829
Coord A exon
chr1:155156830-155157591
Coord C2 exon
chr1:155157592-155157700
Length
762 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
AAATACGTTTGACATTCCAGAAA
3' ss Score
3.77
Exon sequences
Seq C1 exon
TGCACCCTGGACTCTGAGGTGGCTGTGAGAGTCGGGGGGGAGTTCTTCTTCGACCCGAAGCCCACGGACGCCTCCAGAAACCTAGTGTTGATCGCGGGAGGTGTTGGGATTAACCCCCTGCTTTCCATCCTGCGGCACGCGGCCGACCTCCTCAGAGAGCGGGCAAGCAAGGGACAGGGGTATGAGATGGGGACAGTCAGACTGCTGTACAGCGCGAAAGACACCAGCGAGCTCCTGTTCAAG
Seq A exon
GTGGGGAGCAGTGTGCGTCTCGTTTAGCTGGGCGTGAGCAGGCTTGTGGCACGGGCCTTTCTTCTCTCCATTTGCTCTTCTCTCCAGCAGTTCAAACCAGAGGCTTGAAAGGCTGAACCCTGTTCAAGAGAGAATTAATCAGCACATCCTATCCTGCCCAGAACTATTTAAAAAGCTAGTGCTAAGGAGGCTCCCAGTGCAGTGACAGAAGAGGGCAGGTCTGGCGGGCTTGAGTCTGGAGGTGGGTGAGCAGAAAAATTCAGCCTGCCCCTGGGGCTCCCCAGAGGGTCAAGAGGCCTACGAGTGGGCTGGGTGCCCCAAGAGTAGGTGTGACCCAGCTCAATACGTGAAACCCCCATCAGCTGCATCTGCAGGAACTAAGTCCCTCTGAGGGAGAAGCCTGTCGCTCTGGGTGGCTTTGCAGCTGCAAGGATGAACAAAAGAACAGAAACAGTTAAAAGACACAACTGTGGTCACTGAAACTGCTGCTTAATTGCCCACGCCTGAGAGAAAAGAAAAAAGCAAAATCTCCTGGAGAGTTAGTAATATGCTTGTTAGCATATTCAGATTTCAATTAAAGGCAAATAGCCCCCCGCACTCAGATTGCTCTGGCCTGCCCGGCTGCAAACAATGCCTCTCTTAAGTGGAGAGCCGAGCAGCGGACGTGTGCAGAATTGGCAGTGGAGCTTCGGCGTCCGGGGGGTGCACATCTGTTTTGGTTTTTTAAAATTGTCGTGTGACCAAATACGTTTGACATTCCAG
Seq C2 exon
AAAAATATCCTCGATCTAGTAAATGAATTTCCTGAGAAGATTGCCTGCAGTTTGCATGTTACAAAACAGACGACACAAATCACTGCAGACCTCAGACCGTACATCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891:ENSBTAT00000006434:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=PU(42.1=63.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGGACTCTGAGGTGG
R:
ATGTACGGTCTGAGGTCTGCA
Band lengths:
345-1107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development