DreINT0109272 @ danRer10
Intron Retention
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20703569-20703992:+
Coord C1 exon
chr19:20703569-20703805
Coord A exon
chr19:20703806-20703883
Coord C2 exon
chr19:20703884-20703992
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GAAACATTTGCTCTCTTCAGGAC
3' ss Score
8.1
Exon sequences
Seq C1 exon
TGCTCTGTGGACTCTCAGGTAGCCGTGAGGGTGGGGGGTAATTTCTACTTTGACCCTCAGCCTTCTAACCCTGTGGTGGACCTGTTGCTGGTGGCTGGAGGTGTTGGAATTAACCCTCTATACTCCATCCTGCTACATGCAGCTGATCTGCACAGACACACTCACAGTCACAGATACACACCAGGACACACACACCTGTGTTACAGCGCCAAGAACACTACAGAGCTGCTCTTCAAG
Seq A exon
GTAAGTGTTTGTAATCTTGACTTTTAAACACATAAAAGTGAAGCTTGACACTGATTTTGAAACATTTGCTCTCTTCAG
Seq C2 exon
GACACCATTATTGACATTTGTCACGAGCGACCAGATAAATTCTCCTGCCATTTCCATGTTACCCAGCAGAGCTCCGACATAGAGCCACAACTTCAGCCTTACACTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664:ENSDART00000151693:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(14.7=17.7),PF0017516=NAD_binding_1=PU(45.0=62.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGGAGGTGTTGGAATT
R:
TCTGGTCGCTCGTGACAAATG
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]