RnoINT0106311 @ rn6
Intron Retention
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8231482-8233579:+
Coord C1 exon
chr16:8231482-8231724
Coord A exon
chr16:8231725-8233470
Coord C2 exon
chr16:8233471-8233579
Length
1746 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CAATATGTTTGTCATTTCAGAAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
TGCACACTTGACTCAGAAGTGGCTCTCAGAGTAGGTGGAGAGTTCTTCTTTGACCCTCAGCCCACAGATGCCCCTCGAAACCTCGTCTTGATTGCTGGAGGGGTTGGGATTAACCCCCTGCTTTCTATCCTGCGCCACTCGGCAGATCTCCACCGGGACCACAAAGAAAAAAGGAGAGGCTATGATATAGGAACAATAAAACTGTTCTACAGCGCAAAGAACACCAGTGAACTCCTGTTTAAG
Seq A exon
GTAAGGTGGCAGATATGTCTACCGTGCACTCCATGCCCGTGTGTGAAATCGGGTAGTTCATAAACAGCAGGTGACATGACATGACATGACGGGTGCAAAGGGGGCTGCTGGGCTGAAGGCTGATGAGAGCTCGGGGCAGGAGGAAAGGAGTGTGTGCGGTGGGGTGCGCAGCCAAATTAAAGTGCATATGAGAAGGCAGTAATGAAACCTGTTACATTGTATGCTAATTAAACACTGAAAAGTCATACAGGTCATAGGACAAGGAGGCATGAGACCTAAGGGACTGACTGAAGTAAAGGGAGAAGGGTGGGGTGAATATGGCTGAGGTGCCTGATGTAATACCAGAATGTATAAACCAATCATCCAATGGAAATGTCTTCTATGAAGCCCATCACTGAAGAGTGAATATGTGCCAATACAAAGAAATAAACGTAAATGGGAACATGTTTTCTTCTGTAGGTTCAGATTTCTCTGCAAAGGTTCACACAGAAGGCTTAGCAAGGCTTAATCAATTCAAATGATAATTATTAGATAATAGTCCACCCAGGACAGTTAAAAAAGTCCCCAGCTAAATCACAATATAAGATGAGATTTGGGGCGTCGCGGTTACTTTTCTATTGCTATGATATAATACTGTGACCAAGGCAACCTGTAAGAGAAAGTTTAACCTGGAAGTTCTGGTTTCAGTATAGTTCATGACCATCGTGGCGGCAGGCAGGCAGGCAGCACGGTGCTGAAGGCTTCATCTTGACACAAGCAGGAAGCAGAGAGGGTAACTGCAGTGGGATTTGTCTTTTGAAACCTCAAAGCCCGCCCCGATGACACACCTCTAACAAGGCCACACCTCCCAATCCTTCCCAAACAGTTCCACCAACTGGGATCAAGTAGTCAAGCATGAGCCGGTGAGACCCATTTTCATTCAGTTCACCAAGTGGGATAGAATCTAGAAGTTAGTGGAACAGAAAAGTCACTAGGGCCAGGCATGGTGTCACACCTGTAGCCCCAGCCCTTGGCATGTGTCTTAGTCAGGGTTTCTATTCCTGCGCAAACATCATGATCAAGAAGCAAGTCAGGGAGGGAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGGCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGCCTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAAGACCACCAGCCCAGGGATAGCACCACCCACAATGGGCTGGGTCTTCCCCCCTTGGTCACTAATTGAGAAAATGCCTTACAGCTGGGTCTCAGGGAGATATTTCCTCAGTGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGGCAGTACAGCATGGCAAGGCTGGAAGTAAGGTGTTTGTGGCCAACCAGCAGATTGACTGCTAACTTGACTACGTGAGACTCTGTCTCAAAAACGGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGCACCAGGTTGTGGTGGTTTTGAGACATTATCCCTGACATTTGCTGCGTAGACCAGATTTGGCTTGAACTCAGAGAGAGCCACCTATTCCCGCCTGCCACATGCTGTGCGTAAAGGCTGTGCCACCATACCTAACTATAGTTTATTTTAACTGTAGCTTGATCCAATCAATATGTTTGTCATTTCAG
Seq C2 exon
AAAAATATCCTCGACTTAGTACATGAGTTTCCTGAGAAGATTGCCTGCAGTTTTCACGTTACAAAACAGACGACCCAAATCAGTTCTGAACTTAAGCCTTATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760:ENSRNOT00000026751:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(11.0=12.3),PF080307=NAD_binding_6=WD(100=70.4)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCAGAAGTGGCTCTCAGA
R:
TGTGACATAAGGCTTAAGTTCAGA
Band lengths:
343-2089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]