GgaINT0096334 @ galGal3
Intron Retention
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34267012-34269792:+
Coord C1 exon
chr2:34267012-34267254
Coord A exon
chr2:34267255-34269683
Coord C2 exon
chr2:34269684-34269792
Length
2429 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AAGTATGTTTAACATTACAGAAA
3' ss Score
3.95
Exon sequences
Seq C1 exon
TGTACTCTTGACTCAGAAGTGGCTCTGCGAGTGGGAGGTGATTTCTTCTTTGATCCTCAGCCTGGTGACACCCCTGTAAAACTAGTGCTAATAGCAGGGGGTGTTGGAATTAACCCCTTGTTTTCTATACTGCTGCATGTAGCAGATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
Seq A exon
GTAAATGATAACTAAAAAAAGAACTCTAATACTCAGCAATTAGTACATGTATCATTTTGTTGCCAGGTCACAGAGAACCCCTTCTGTGTAAGACATTGTTCAGACAGGCCAAAGTCACTTCCTGCCTCAAATCCCATCTGCATTTTGTTACTTATTACGCACAAATAATGTGCATATGTACAAATTTCAGATGTTGTTGGACATACCTGCTTGCATTGACTGCACTGGTAAGCTGACTAGCCCTGCATGGCTGCATTTTCCTATAACCTCCTAAGAGCATCATGGTATATCAGACATCACATATACTGTAATATATTTGTCTATATACATAGTAGTAGTTTGCATAATGCTGTATACTGTAATAGGAGAACCACATAACTTCTGTACAGATTCTGTTGAATTTAAAGACTAGTAAGAGCAATTATAGCCAAAGAAAAAACTTCCCAAACTCATAGGGAAGCTTTGTTGATAATACATTATTATTGGGTACTAGTGTATGAATGAAGGAGTTTATCAGCAGTTCTTACAAGGCACTTGTAACAGGGCTTTGTAAGCATTTACACACATTTATCACACATTCAGCCATTAAGGGCTACTGATGATGTTTTAGGGTCTCATTAGCACAGCTTCTGTGAAGAAGCATCCCTAATGATACAGGTTTCTCTGAAGAACTGAGAACTTTTAAGGTCAAGGTGCAAGTTGATGATAACTCCAGAAATGGTATAAAGGATCCACTACTAGTTTTGCCCAAAGGATTGAGGAAACAGGATTGCTGGGCTGTGTGTTGTTGGGAGATTGACACACATATATCACCAGGAGGAACTGCTAGGTTTTTGCTGATGTTCTGGAGGACATATTCCCTGAAGCAGCAGCCTACGTATAGTGCTGTCCTTCTGCTTGTCAGCCTACTCGTTTGGCATGTGCTCTGGTTTCACAGGTATATGCACTGCTTTGAAAATCTTATTCTCTGAAATAGGAGAAGCATGCAATCTTAAGATTACAATTACAAAGACTACCATATTAACTTGACTACTTCAAGATGCCATTTAGCTCATTTCATGTGGACTGAATGTTGTCCTTTATTGTGGCTGGGACAGTGGGATAGGTGTTTTCCCTTAGTTCTGTACTGCTCAGCTGTTTGCTTTAGTTTGTACAGCAGCTTACTAGGCTGCAGAGATCCTGCTGAGCTGTTCACATTCTCCTTCATTCAGTTAAAGAGAGCCTGTCTATAGCTCTAGGATACTGGAAGACATTACATGGTGGTTTATGTCCCATGAATCATACCTGCCACTTTCTGTCCTTGTCTCTGAGTCACACAGAGGTAGCTTACACGTAGGTGCTGAGAATGATTGCAGCATTATTTAAGCTTGTTAAGGCCTGCCTTAAACTGCTTCAGTATACTTTCCAGGTAGGTCTTGGGACTTCAGTTCAACAGGACATGGCTTGTTTCAAAAGTGCTATCAAACTGTACGTGGTTCCACATGGAGGAGTTTACCGTCCCATTTGGACCAGTGAAAATGGGCCGACATTAAAGTACTTACTAGTGGAATAGTGTACAGCAGTGCCTTATCTGCTGTTCTTTATTCCCCAGCTTTTTATGGAGTCAGAAACGGGTTTGTCTATTGAATAAAATCTGTTTAACTTTTTTTTTCTTCTTTTTTTGCGAAGTAATCCATAGCAGTCTGTTCAATGCAGTAACTGGTCTGTAAGCAACATAGAGAAATGAGCTAATTCACCTGTTCACAGAATAGAAATTATTTCCACAGTACCCATTCCAGCAGTGAAAACCCCAATTAATACAGAATCCGGACAGTAAACAAGTCCTCGTTTCAGAGTGTCTACAGCATCTGACTGACAGGGGTTTCTTTGGTTGTTTTCTTCTGTTTTGTTTTTAATTATGATTTGAACCAATACCACTGGGTTTGTAGTGGTAATTACCACAGTTGTGAATAACACCATAGTTGGTTTTACTTGGAGAAGGACGGAAAGGATCTGATATTCTTACAAGGTAAAGGAGCTGGGACTCAAAAAGTTTGTAAGAAATGGTAAACGTATACTGCATGTTTCTGTTTTTTTCCAAATGGAAAACAAATATGAAAATAAAAGGGAAAAAAACACAAAGTTATATGGGAAAAAAACAGGAAAGGAGATACAAAACTCATTCTTAGATCCAAATCTTACAAATTACAACCTATTGCAAAACAGGAGGAAAGCGCTAACAACAGAGCTGGTAGCATATTCAGATTCCAGGTATAGAAATTCAGCGTACTTCTGCAGATCGGCCCTTTGAAGTCAAACCCACAGAGTACTCAGTGCTGAAATGCAAAGTCGTGGTTCTCACTCATGATCACTGGTGTTCTGGGGCAGTATGCAAACATCTGCTTTGATTTAATGGCTTGTGGTATAAGAAAGTATGTTTAACATTACAG
Seq C2 exon
AAAAATATTCTTGGTTTGATGAGTGCATTTCCTGGAAAGATCACATGTCGTTTCCACGTTACCCAGCAGAGCTCACCCATCTGTGAAGAACTTCAGCCCCACGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239:ENSGALT00000018329:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(12.0=13.6),PF0017516=NAD_binding_1=PU(42.1=63.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]