BtaINT0107383 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85121140-85123914:+
Coord C1 exon
chr10:85121140-85121306
Coord A exon
chr10:85121307-85123724
Coord C2 exon
chr10:85123725-85123914
Length
2418 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TCCCCCCCGGTGTCTCACAGTGC
3' ss Score
7.76
Exon sequences
Seq C1 exon
GAACGGGCTGCCGGTGCGGGCCGACGGCCACCGTGTGCACCAGTCCCCGGACGGCACGCTGCTGATCCACAACCTGCGGGCCAGGGACGAGGGCTCCTACACGTGCAGCGCCTACCGTGGAAGCCAGGCCGTCAGCCGCAGCACTGAGGTGAAGGTGGTCCCACCGG
Seq A exon
GTAAGGAAGGGCCACCCCAGGCAGCTGCTTGTCTTCGGGAGCTGGCCGTGTGCAGCCGGATGCGGAGGGCACGGGCTCTGCAGTCGGAGGGGCTCTCCCAGTTCCTGGTTGTGTGACTTGGGGCGGGCCAGTCGTCACGTGGCCCGAAACAGCCCTGGGAGGGAACCGCCAGGGCCCAGCTGTGCTGGTTGGCCTGGACGGTCACGGCTGTCGGGGCCGTAGCACCTCACCAGGACCATGCAGGGCGTCAGGCCTGGCTGCCTCCTATCTGCCAGGCTGAGCCCGGAACTGGCCAGGTTAGAGGTTGCAGTCTGGTAGAAATGTTGCTTAGTGAGCAGGACTGACGGTGGGCTTCCAGTTTATGAAGACAGGGACTGGAACCCAGCCAGGGCCCAGCATCACCGGGTGCTCAGGCTGAGTGTTTGTGTGTGAAGGTGGTACCTTGGGGAAGGCACCATCCTGCAGGGGCCGCTTTTCACCTCAGTCGTGCCCAGCAGATAGATCTCTTGTCCACATACTTACCAAACTTACAAGACTTGAGACAGGCCAGAGTGCAGATTTAAGTGAGAGAGATTGCTGTCAGGGGGCCCCCACATGGGCATGTCTGTGACTAGGTAGAGATGTGTCTGCATAGGAAGCCAAACTAGAACCAGAAACTCAATTGACGCTGAAGTTTGGTGGTGCTCCTAATGATGCATGGTCACCAAGATGAAATGGTGTGATGGGACTGCCTCCGGGACAGCACACTTATGGCCTCAGTCCGGCTGTCTGTCTTCTGCCCCGTTAGATGAGTGTTGGTAATCTGAGACACTTTCTTTGGGGGAGGAGGGCACTTCTTAAGGAGAAGCTATCTTCCTCTCTAACTGTGTTGGTTCCGTCAGTTAAGCTGTATGTGTCTGCCATCACCCATTTAAGCTTTTTGTGGCATTTCACTGCTTGAGGCTGCCTCACTGCCCTGTTCATGGTCTGGTGGCATGCTGGAACTGCAGTGTTAGTAAGGGGGAGGGGCCTTGAGCTGGTCCCACTCTGGGGACAGCTTGCAAGCTTGCTTTCTCTTTTTTTCTTTATTGGAGTATAATTGCTTTGCAATGTTGTGCTAGTTTCTGCTGTACAACAAAGTGCTCTCAAGCTTTTTACCTAAAGGTTTAAGGTGAGAAACAGAAAATACTGTAAGGTTAAAACATGGGGAGTGGGGCTCACTCTTTGGAATGGGATGCCCATTACGTGCTGGTTATTTTAGCCATGGTTACTATGTGCTTCAGTTGCTATCTCATTAACTCCAAATGAGAGAGCAGACACGGAGAGCTTATGTAACTGTTTGCCCCAAGTCCCCTGGCTGGAAGGGGAGAGCCACGATGGTGCCCAGCCTGCACCATCACGCCCAGCACCTGCTCACCTCTGCCTGTGATGAGTCCAGGAGCTACGACAGCTGAGATTAAGTTGGTAACGAAAGTGGCGATTGTTAAAAACAAGCATAAACAGCTTGTCCTTTATGTAAATGTAGGTGGTCCGCACTCTTGTTACACTGACGAGCCAGCCTTCACAAAGCCGTCGGCTGCTCAGGTGTTATCTACTAGTTGTATCTGGGGGGAGGTGTGGAGGGGGGCCTTCTGCAGCCCCGTGAGGTGACTTTGGGGAGCTGCTGTCAGGCCTAAGCCAAGGCTGAGCCCTGAGAGCCCCTCCCAGAAAGAAAAGAGAGGTTAACTAGACAAATAGACTTCAGTCCGAAGACAGAGCAGCAGAATGAAAGTCCCACGGTGATTTATAAGTTATGGACGTGACGAGCAGGTTCAGAGGGGAGGCGCCCGGCGCTTAGCGCTCAGTGTCGCATCAGCGCCACTGCTCATAGCCTGTCCTCCCGTCACTGGCCTGACGGGCTCTGCTGTCTCTGGGGGAAGTGGGAACTGGAAAGCTGGGGAGCTAAGTGACTGAGCTGGGGCTACTGAAGGCACAGAACGCTTAAGTGGGAGGAAACCAGCAGTGAGAGACAGACCGCTCTTGCCAACTCAAAACTGTGCTTGGGGCTGACCCCGCTCTCCTTGTCCAGAGGCCACGGCCATATATTCTGCGGCTCTTCAGGTCTCAGTCAGAGCAGGGGGTTAACTTCCAGAGATGTTTAATCAGCTGGAGAGTCAATATCTGGGGGTCTGCGATGGGCTGTGCACTGGGGCGAGCGGTGGGGGTTGGGGAGAGCTATAAAAGGATAACAGGAGGCCCACTGCATGCCGAAGCGGGGCCCAGGGCAGTGCAGACCGTGTGCCCTCAGCTGGACACACAGGTGTTACCGGGATACAGTGACCGGCATCTCTGGGAACCTGGCGGTTACAGCGCTGCTCTCCTTTAGGGAAATGACAGGGCAGGTGAGTTTCCAGCCACACGTAACTTTCTCACCACCCTCTCCCCCCCGGTGTCTCACAG
Seq C2 exon
TGCTGGCCACCCAGCCCCGGGACCCCAGCAGGGACTGTGTCGACCAGCCGGAGCTGGCCAACTGTGACCTGATCCTGCAGGCCCGGCTCTGCGGCAACGAGTACTACTCCAGCTTTTGCTGTGCCAGCTGCTCCCGTGTCCAGCCGCCCGCGCAGCCCGTCTGGCAGCAGGGACACAGCTCATAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680:ENSBTAT00000015505:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(59.8=91.2)
A:
NA
C2:
PF086866=PLAC=WD(100=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development