MmuINT0115081 @ mm10
Intron Retention
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83789155-83792382:+
Coord C1 exon
chr12:83789155-83789321
Coord A exon
chr12:83789322-83791831
Coord C2 exon
chr12:83791832-83792382
Length
2510 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTCTCTCCTTGTCCTGCAGCGC
3' ss Score
11.43
Exon sequences
Seq C1 exon
GAATGGCCTGCCAATACAGGCCGACGGTCACCGTGTGCACCAGTCCCCAGATGGCACACTGTTGATCCACAACTTGCGGCCCAGGGACGAGGGCTCTTACACATGCAGTGCCTTCCGTGGGAGCCAGGCTGTGAGTCGCAGCACCGAGGTGAAGGTGGCCCTCCCAG
Seq A exon
GTGAGAAAGGCTCGTCATGGGCTTTGCTGTCCTGAAGGCAGCTGAGCACCAAGGGCCACGGGCACGTTCTCATCTGTGCTCACGTTCTGGTTACTGGCACTGTAACAGGGGTGGGTGTTTCTTATGGCCCCAGAGCCCTGCTTTACTGGGGCTAGCCCACCATCTAAGGCCATGGTGAAGATGTAGCAAAGTGGTCAGAGTTCTGTCATTCAGCTTTATCCCTAACATAATGTTCATGGTGGTTGGCTGCTAAAGTCCAAATTCTAATCAGGGTGGCAGAAGGCCCTGTGGGTCTGGGCTGTGGCTCAGTGCAGAGCTCTTGCCTAAGGCCTTAGGCTCTAGCCCAGCACCGTGACAAACACGGAGAACAAATAAATAGAAAAGGCAGAGGACAGATTCTTTGATCATTGTTGGCACAGTCTCCTTTCCAAATCACGTACAGTTTGTAATTTAAAGATAAAGATTAAAAATTTATATAAAAAATGGCTGTAGGATGGAAACGTGTGTTTTTGATCATCTAGGCATGTAATAGGATACAGTCACCCTCATCCTTTTTCCACGAGACAGGCAGCCAGAGAGCTGCAGGGTGTTCCCACTTGTTCACACAGCAGATTTGTGGCCAGCTGGGACTCAAGCCCAGGCTTTTTGACTCCTGATTTTACTTAACTTATGTAGCCCAGGCTGACCTTGAACTTGTTATGTAGCCAACGCTGGTCTCACCTTTAATCTCCCTGCCTCTGCTTCCAAGGTGCTACTGTGCCTGTTCTCTTAAGCTCCATCTCAGAACTCGTGAAGCAGGACTGTTTGATGTTCAAACTTGCAGGGGCTCTGTGTTTAAGTGACAGGGCAGGAGGGGCCCCTCACAGTGCTCTCCACAGGTCTTAGTGTTTCAGGGAGATGGAACATCAAACAGCTCAGAGCCTCCAGTCAAACAGCCAGTTCTCATAACCTGAGGTGCATCCCGAAGATGCCAGAGAAAGGGTTCTTGGCTTGGCGGTAATGGTACCAACTGCCTGGTGTGCTTGAACATTGCCGTGCCACCGGGGCAGGCCTGGCTGTCCTCCTGGATGCCAGACTGCGGGTGAGAACTGGCCAGGGGTTGAAGGTGTCTGCTACAGTGTTGCTTTGTGAGACTGACACTCAGGTTTCCCTCTGTGAGCTCCCTGGGACCCTAGGGCCCAGACAAGTGCTCTGCAATATGGAGACTCACACGGCTGTGACTGTGTGTGCCTGTGTGACCACACTCTGGTCAAAGTCCCATATGGCAGGACTTCTACCTTTGATGTTTCTAGAAAATCCTACTCATCTATACACTGATCAAACTAATAAGACCAGGAAAACCCAGAATGCAGATTTACTGTGGTGAAGAGAAGAGACCTTAGGAGACTGAGGATCTGAGCATGGTGATACATGGTGACACATGCCTATGAATTCTAGAACATTATCCTGACTTAAGACAAAACCTACCACACTACCAAACTCCTCAAGGGGACCTGGATGTTTACATTTGTGATCAGCCGTAGATGTGTCTACAGTGAGGGAAGCTTGTTTGACAATGGTGGCTAGTAGGCTTTTAGGCTTTTGGTGATGTGTGGCTGCCAAGCTGATCTCCCAGACACCACCCACGGCCACAGGCCTCTTTTGCTCTCTGCTGCATGTGGCTAAGAATATGTTCCATATTCTGGAGGCATCTCTCCAGAAGCCCGGCTGTCCCCCCCCAGCCTGTCTGTATTCCTTTCACTGACCAGGCTGCAGATCTGTTCTAACTCGTTGGTTTGGAGTCACATAGTGAGTGTCTCATGACTGGGAGCACTGGAGTTAGTTGGCTTAGGCTTTTCTCACCCTGGCTTGTTCTGCCCAAGGGTTAAGTGAATAGGATATATTGTGGGGACAAAGGCTGTCTGCTAACCATTCTGTCTGCCTCATTTTCTGAGGGGAGGACACGGCTGTGGGGCCAGGGCAGCAGACAGCACTCAGGTTTTTGCTGTGTGCCTGGTGGTAGGGACAGTGCTGCAAGAGCCTGCAGAGAGAAGGGGGGTAATTGTAGGATGAGAGAGTGGAATCAAATTCTTAACAATCACCAGACACTCGTAGGATATTGAGGGTGGCACGCGGGCTTGGGCCTCCGTGTAGTCTTAGAACTTTGAAGATTCATCACGTTCTCGGGTGGAAACCAGGAAAGATGGGGATATAGGAGACAGATGCAAGCTGGGAGGTTGGTGGAACCCAGTAGCAATAGGAAGATGGCAATGGCTTACTGACTTCCGGTTTCCCTAGGACTGACCCTACTGATCTTTCCTGCCAATCTGGGCCCATATAGCTGTCATTGGCTTTGCAGTTCCAGACAGTAGGGCAGGAAGTTAAATGTGGAGCCGTCGATGGTCTAGCCAGAAATAGGAAAGCCTGGAAAAGGCTGTGCACTGGGCATAGGCCGCAGATAAGGGTCACAGGAGGGCCTGTGAGAGGCTGCAGCGAGAGCTGCCTCAGCCCTTTCTCTCCTTGTCCTGCAG
Seq C2 exon
CGCCAGCCGCACAGTCCAGGGACCTAGGCAAGGACTGCATCGACCAGCCGGAGCTGGCCAACTGTGCGTTGATCCTGCAGGCCCAGCTCTGTGGCAATGAATATTACTCCAGCTTCTGCTGTGCCAGCTGCTCCCGCTTCCAGCCAAATGCCCAGCCTGTGTGGCAGCAGGGATGAAGGCTGGCTGTGGCGCCAGGTCTGGATAGTTTGCTGGGGAGAAGGGATGGTAAGACATGGCTTGCAGAGGGAGTCGTCTTTCAGATCCTGCCCCTCTCAGAAATCCAGGGTTGAGCCCCAGCAGCTGCCAGTGCCGGCTTCCCTTGTAGTGCTCAGCAGGGTCTGTCTGATATGACCACAGGCTGCTGTGAAGAAGAGGAACCCTTTACACCTCCCCTCTATAGTATCTACTGCACCGAGGACCTTTTATCTGAAATGCTTTGGACCAAAGTGTTTTAAGCTATTAAGTATTTGTAGACTTTACTAATTGAACGTCCCTAACCTAAAGTTCTGAAATGCTCCGAAGCTTCAAAGACCCAATCGCCATGTCAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223:ENSMUST00000121733:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(59.8=91.2)
A:
NA
C2:
PF086866=PLAC=WD(100=59.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types