BtaINT0107727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36682726-36683234:-
Coord C1 exon
chr12:36683064-36683234
Coord A exon
chr12:36682807-36683063
Coord C2 exon
chr12:36682726-36682806
Length
257 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AATTTTTTTTCCCATTTCAGGCA
3' ss Score
9.94
Exon sequences
Seq C1 exon
ATAGAAGCCCAGATGGATAGGCTGAGTTCTCCCAGTTGCCACTCGGTCTCCGTCAAATGGCAGCAGCTGAGCACGGACACGCCCGCACCCCTGCAGGCCCCCACCCAGGTGCAGTCCCTGTTCCACAGCGAGCGACTCCTTGTCTACGGGCTCACTCCTCACTGTACACAG
Seq A exon
GTGAGGAGCACGCAGGCTTTTTATTATGGGAACAGCAATGTGTTTTGCTAATAACTTTCTTTTTCTTTTTTCTTCCCTTTCCTTTACCCCCAAGTCATAATATGCTACACAGTTTTTCCTGGGATCACAGTGCTTGGTTAACCAAGGGCACTGGAGAGCCTCTTAATTCTCATTAAAATCACTGAAAGAATCACTGTTGAACTAACCAGGACATTATGAAGTAGAAAAACTATAAGGAATTTTTTTTCCCATTTCAG
Seq C2 exon
GCAACTCTACATGCGCTGATTCAAGAGAGAGAGTATTCTACAGTGGTGTCAACTACTGAACTTCAGAAGACAACTGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400:ENSBTAT00000035651:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAAGCCCAGATGGATAGGCT
R:
CGTTCCAGTTGTCTTCTGAAGT
Band lengths:
252-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development