GgaINT0108002 @ galGal3
Intron Retention
Gene
ENSGALG00000017146 | PARP4
Description
NA
Coordinates
chr1:183558951-183559536:-
Coord C1 exon
chr1:183559366-183559536
Coord A exon
chr1:183559032-183559365
Coord C2 exon
chr1:183558951-183559031
Length
334 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GCTGTTTTTTCTCATTATAGGCC
3' ss Score
9.41
Exon sequences
Seq C1 exon
ATACAGAACCAAGTGTCTAGGATATTTTCTCCAGGATGTAGTTCTGTTTCTATTAAATGGCAACAGTTTGATATAAATGCACCAAAGCCAATGCAGGCTCCTGCTCAAATACAGTCTTTGTTTACCAATGAGAGGCTTCTCGTCTATGGATTTGTCCCTCACTGTACTCAG
Seq A exon
GTAAAGACCTGGATACATACTGCTGGATGGAAATTCACAACTAAAAAGATTGCAAGATGTTTTGTGTTATATTATGTCATCTATATATCCTTTGTATGGCATGCTTTTAGCGAGGAAAAGGATACCTTATTTAATGTTCAAGTCACTGTACTTTGATAAACACAGGATTCCTTTCTTTGCTACTGTCCCCTTGTTGTAAGGGGAAATGTTTTTAAATATAGACATGCAGAGAGATACAGATCTGAATTACATTCAGCAATCAGAAGAGCATTCACGTGTTATGGTAGCACAGCCTAACACAGAGAAGGAAACTTGCTGTTTTTTCTCATTATAG
Seq C2 exon
GCCACCTTAAGGGCAATAATAAATGACCAAGAACTACAAACTGTGGTGTCAACTACTGAATTACAGAAGACAACGGGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017146:ENSGALT00000027691:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACCAAGTGTCTAGGATATT
R:
TGTTCCCGTTGTCTTCTGTAA
Band lengths:
250-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]