HsaINT0120513 @ hg19
Intron Retention
Gene
ENSG00000102699 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:271]
Coordinates
chr13:25020819-25021324:-
Coord C1 exon
chr13:25021154-25021324
Coord A exon
chr13:25020900-25021153
Coord C2 exon
chr13:25020819-25020899
Length
254 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATTTTTTTCCCCATTTCAGGCA
3' ss Score
10.37
Exon sequences
Seq C1 exon
ATAGAAGACCAAATGACCAGGCTATGTTCTCCGAGTTGCCACTCTGTCTCCGTCAAATGGCAGCAACTCAATCCAGATGTGCCCGAGGCCCTGCAGGCCCCAGCCCAGGTGCCGTCCTTGTTTCTCAATGATCGACTCCTTGTCTATGGATTCATTCCTCACTGCACACAG
Seq A exon
GTAAGAAGACGCAGAGTTTGTTATTCTATGGGAAGACCAATATATTTTGCTAATTTTTTTTCTGTCTTCTTCCCTCCCCTTCTCACCAGCAGATTTTCTTCTTCTGGGAACACAGCTGGTGGTTAGCCAGGGCTTTGGGGAGGCTTCTAGTTTTTATTGAAAGGGGAGAGAAAATCACCAAAAGAATTTCTGTTAAACCAAGACACTGCAGAGTGGAAAGGCTAATGAGGAATTTATTTTTTTCCCCATTTCAG
Seq C2 exon
GCAACTCTGTGTGCACTAATTCAAGAGAAAGAATTTCGTACAATGGTGTCGACTACTGAGCTTCAGAAGACAACTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-PARP4:NM_006437:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAAGACCAAATGACCAGGCT
R:
AGTTCCAGTTGTCTTCTGAAGCT
Band lengths:
252-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)