MmuINT0115462 @ mm10
Intron Retention
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56629074-56629547:+
Coord C1 exon
chr14:56629074-56629244
Coord A exon
chr14:56629245-56629466
Coord C2 exon
chr14:56629467-56629547
Length
222 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
ATGTCTTTCTCCTGCTTCAGGCA
3' ss Score
9.31
Exon sequences
Seq C1 exon
ATAGAAGCTCAAATGACCAGGATACGTTCCCCAAGTTGCCACTCTGTCTCTGTCAAATGGCAGCAGCTTAGCAGAGATGCCCCCGAGCCTCTGCAGGCCCCGGCATGGGTGCCCTCTTTGTTCCACAATGATCGACTCCTGGTCTACGGCTTCATTCCTCATTGTACACAA
Seq A exon
GTAAGAAGAGCAGAGTTCCTTACACTGTGGGAAAGACTTGCTCTTCCCCTTACCCCCTCCCCTTTCCCTCTTCTTGGCATTGTGGTTGCCCTCTGGGTATCCGGCTGGGGAAGCTCTTGATTTCTCTTGGGAGGGGAGGGTGTCACTAGAAGGGTGGCTATTACACTAACACACACTGGGAGCAGAAACACTAACAGAACACATGTCTTTCTCCTGCTTCAG
Seq C2 exon
GCAACTCTGCAAGCATTCATCCAAGAGAAAGAATTTTGCACAATGGTGTCAACTACAGAGCTTCAGAAGACAACTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509:ENSMUST00000161553:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAAGCTCAAATGACCAGGATACG
R:
AGTCCCAGTTGTCTTCTGAAGC
Band lengths:
252-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types