HsaINT1026178 @ hg38
Intron Retention
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24446681-24447186:-
Coord C1 exon
chr13:24447016-24447186
Coord A exon
chr13:24446762-24447015
Coord C2 exon
chr13:24446681-24446761
Length
254 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATTTTTTTCCCCATTTCAGGCA
3' ss Score
10.37
Exon sequences
Seq C1 exon
ATAGAAGACCAAATGACCAGGCTATGTTCTCCGAGTTGCCACTCTGTCTCCGTCAAATGGCAGCAACTCAATCCAGATGTGCCCGAGGCCCTGCAGGCCCCAGCCCAGGTGCCGTCCTTGTTTCTCAATGATCGACTCCTTGTCTATGGATTCATTCCTCACTGCACACAG
Seq A exon
GTAAGAAGACGCAGAGTTTGTTATTCTATGGGAAGACCAATATATTTTGCTAATTTTTTTTCTGTCTTCTTCCCTCCCCTTCTCACCAGCAGATTTTCTTCTTCTGGGAACACAGCTGGTGGTTAGCCAGGGCTTTGGGGAGGCTTCTAGTTTTTATTGAAAGGGGAGAGAAAATCACCAAAAGAATTTCTGTTAAACCAAGACACTGCAGAGTGGAAAGGCTAATGAGGAATTTATTTTTTTCCCCATTTCAG
Seq C2 exon
GCAACTCTGTGTGCACTAATTCAAGAGAAAGAATTTCGTACAATGGTGTCGACTACTGAGCTTCAGAAGACAACTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699:ENST00000381989:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAAGACCAAATGACCAGGCT
R:
AGTTCCAGTTGTCTTCTGAAGCT
Band lengths:
252-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains