DreINT0110373 @ danRer10
Intron Retention
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20685829-20686626:+
Coord C1 exon
chr9:20685829-20685999
Coord A exon
chr9:20686000-20686545
Coord C2 exon
chr9:20686546-20686626
Length
546 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAC
5' ss Score
3.09
3' ss Seq
TGTAATAATTATTCTTTAAGGCC
3' ss Score
4.77
Exon sequences
Seq C1 exon
GTGCGCGCTCAGGTTCAGCGTATGGAGTCTCCAGGCTGCAGATCAGTGGCGGTGAAGTGGCAGCAGTTTAATCCCAGAGCGCCTCCTCCTGTTCAAGCTCCCTCACAGCTTCATTCCCTCTTCAGTGACTGGCACACTCTCGTATACGGCTTTGTGCCGCACTGCACTCAG
Seq A exon
GTGGACATACTTTACTGATGCTGATGTTCTGTAAATACTAATGAATAATGACACGATATCTGCTGAGATTTGTCGATCACTGCAACATTTTAGTCAATATTTTAATATTTGTTCAGTATTGCAGCTTGAGTTGGTGAGTTTAATTTAAAATGGTCAATGAACTGGTTCAAAACTCTGAATCAACAGTTTACAAAATCCCTGAATGTTATTCGTGAGGACTGGACATCTATTACTGTAAATGTACTAATATAGTATCTAATACAGTGTCATGAGTGAAAATAATGAAATATCCTGCATATAATTGTTCATTTACAGGAAATGTGGAAAATTTCCTGTATAAAAAAGACAATTTTTATTAAATTTGGTTATTGAAAACCTTGTGAAGCAATTAATATTGGTAACATGAATAAGAAGGTTGTAAAAGAAATTTGGATGAAAAAAATCGAAATTGAATGTGAAAATAATAATACAGTAATCAATATGCAGCTGATTTCATAACTGTTTGCCTGTTTATAGTTTATAATTGTGTAATAATTATTCTTTAAG
Seq C2 exon
GCCACATTGTTTGGTGATTTGAGTGGGCAGGAGATCAAAACAATGGTTTCCACCACAGAACTACAGAAGACGAAGGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934:ENSDART00000145111:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGTTCAGCGTATGGAG
R:
AGTTCCCTTCGTCTTCTGTAGT
Band lengths:
246-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]