RnoINT0001944 @ rn6
Intron Retention
Gene
ENSRNOG00000061152 | AABR07018038.2
Description
NA
Coordinates
chr15:36878811-36879259:+
Coord C1 exon
chr15:36878811-36878969
Coord A exon
chr15:36878970-36879178
Coord C2 exon
chr15:36879179-36879259
Length
209 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGTGTTTCTCCTGTTTCAGGCA
3' ss Score
10.33
Exon sequences
Seq C1 exon
ATGGCCAGGATACACTCCCCAAGTTGTCACTCCGTCTCTGTGAAGTGGCAGCAGCTTAGCAGAGATGCCCCTGAGCCCCTGCAGGCTCCCACGTGCGTGCCCTCCTTGTTTCACAATGATCGACTCCTGGTCTATGGATTCATTCCTCATTGTACACAG
Seq A exon
GTAAGAAAGGCAGAGCTCCTTACACCATGGGGAAGACGATGGATTTCGCTATGGTTCTTCCCCTCTTCTTGGCACTATGGTTCCCCTCTGGCCAGGGAAGCTCTTGATTTCTCTTGGGAGAGGAGGGGGTGGCCAGAAGGGGTGCGGCACCATTAGCACACACTGGGAGCAGAAATGCTAACAGAGCACTTGTGTTTCTCCTGTTTCAG
Seq C2 exon
GCATCCCTGTGTGCATTCATCCAAGAGAAAGAATTTTGCACAATGGTGTCAACTACAGAGCTTCAGAAGACAACTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061152:ENSRNOT00000078051:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGATACACTCCCCAAGT
R:
GTCCCAGTTGTCTTCTGAAGCT
Band lengths:
236-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]