BtaINT0107735 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025400 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr12:36669388-36671321:-
Coord C1 exon
chr12:36671128-36671321
Coord A exon
chr12:36669488-36671127
Coord C2 exon
chr12:36669388-36669487
Length
1640 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TTGTTTTGTTAATTTCTTAGGAT
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTTCTTCTGAAACGGAAAGTGATAAAACAGGAGAACTTCTGGCAAGTAGGATTTTTAAAAAGCTGGCAGAATATGACCTGAGAAGTGGCTTTACTGCAAGTACTCAGGCACAAAAAGATGAGGATGGCCTAGTTGGCAAAGCAAGCTGGAGGAATTATGTGCCTTCGACTGAACTCTTCAGGCTTCAGACCAAG
Seq A exon
GTACTAGTCTTCTCTCTCCATAAATCTGCTTCATTAGCTTCAAAGTTCAGGATGGTGCTACACAAAGTAGCTACTCACCAGACTGCTGCTGGTCCACACTGACATGAGGAGCTAGTCCCAGAACGCAGCTTCCTTCACTGAGAAGCCAGCCAAACAAACAGTGTGCTTGAGAAAAGCTGGTGCTTACCTACCTATTTTTAACTGTTAGGCCAGAATATCATGAAAGGGAGTGTTAACATTCCTCAGTTGAAGGTTAGCATCCCTCAGTGGGTCCTGGGGTAAGACATTAATCTCCTAGGTTCTAAAACTGCTGAACTGCAATTCACACAAATTTCACATTGCAAAGTAAAGCACAAGTGTTGTAAGTACACTTTAAATATTAAAAGTTCTCAGGAATATGACTCAACATGTGAGCTTATATTAGAGATTAGCATTCCATTTGTGAAGCTAAATCACACTATAAATTTAGTTCTTGCACTGGTACTAAGACCCAATCTGATATCTGTAATTAACTTGTTTTGATGTAATATGCTCAATCTCTCAGCCATGTCTAATTCTTTGCAACCCCATCCACGGTAGCCTACCAGGCTCCTCCATCTGTGGAATTTTCCAGGCAAAAGTATAGTAAAGTAGAAAAGTAACTTGGTTTAGTGTCAGTTCAAGTCCCAACCCTTCCACTCTGTGATCCAGGGCAAGTCAGTCTTTCAGTCATCCACGTAATGAAAGTAATAAAAGTGTCCAGCTCGCAGAGAGGTAGACCAGCTGCCCGCAGCCTCCACCTGGAGAAATGCATGTGAAAACAGCATAGCACAGCAACAGTCTTTGAGCCAGAGTGTTGAGGTTTAGGTCCTGCTGCAACTGCTTGTCAGCTGTGTGACTTTGGACAACTTGCTTAAGTTTTCGTACCTCAGTGTCCTCATCTGCACAGTGGGTTCAGTGACAGTACTTCACAGGAAGCAGCTCACAAGAAAACAGCACTCCACACTAGGTGAAGGCCAGCTGGCACAATGTGTCACTCCTGTTAGTTTTCAAATTGTTGCCATAGATCCTTTCACCCATGTGCTTGCCTGCACCCCACCTTCGCCTCCACGCCCTGTGTTAGTTCACCTTGGACCTGGAGTCTGTCTGCTTCTCAGTTAGGATCCCAGGATCAGGCTTGCAACACTTCTGTAAGCATGTGATGAAGATCCGTCTTAGCTGGAGTGGGCAGAGTATGTGAGCACAAGGAAGGTAGTTTCAAAGAGCATGTTCAACATAATTTTATCTTCAGTAGAAAAGAGTCATTTTCATATTTCATCATAAGGACACATTTTAATGTTGAACAAAAGGAACCATGTTATTTAAAAGTTTGAGAAACATTGTTTCAAAGAATTATTAGAAGAAAAAAAGTATAATACTATTTTAAAAAACGTCCATACGTGAACCTCTCTACTGCTTTATTACAAATGCTACCAGATATAATACTTATTGTCCATAGTATTTATGAGATTCCCAATAATACTGTGTTTGCACATGAAGAAACTTCAATTTTACAGTATAGATGTCTTAATTCCCTGAGTGGAAAACATATTATTCATCACATAACTCATGTGATGAAATTGTAATAATGTGGCTGAAATTTTGTTTTGTTAATTTCTTAG
Seq C2 exon
GATGGATGCTGGAAACTTACACAAGAACTGGGATTTATATTAAAACTTAATACAAATATTTTAAACAGCTTTCTTGAGCAAAAAGGCATTCGATCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025400:ENSBTAT00000035651:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTCTGAAACGGAAAGTGAT
R:
CTAAAGATCGAATGCCTTTTTGCTCA
Band lengths:
294-1934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development