RnoINT0001955 @ rn6
Intron Retention
Gene
ENSRNOG00000061152 | AABR07018038.2
Description
NA
Coordinates
chr15:36898017-36901894:+
Coord C1 exon
chr15:36898017-36898666
Coord A exon
chr15:36898667-36901794
Coord C2 exon
chr15:36901795-36901894
Length
3128 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
TTTTTTTCTTAATTTTACAGGAT
3' ss Score
11.65
Exon sequences
Seq C1 exon
GATTCATCCCAACTAACTCGTGTCGACCTATGTCCAACTATAGCCATAAACTTGCTAAAGCTACAGACATCTGTGACTCAGAGCCACCTCTCAGGGGCTTTAGGGGTGCCAGCCCTAAGGATACGAGCTCTAGGGGTACGGGCTTTAGGGGTGGTACTTTCTCTGATAGCTTCGCTGGTTCAAAGGATTTTGATCCAGGTAAATTTTCCCAAGACCTCAACAACATCGTCTCCTCTCCCAAAGCCCCTGAGCTGGCTGCTACTCAGAGGTCACCTTTACGCAGTCCTCCTAAACCACTTTCTGTCCCTCCTCTAGTCGTCTGTGAGTTTAGCTCTGAGCTTCCCCAGAGCCATTCTTTTCACTTTCAAAGTGGCTCAGTCCACCGGAGCCCTAATTACAGAATGTCAGACATGGCGTCACTTCGGTCAGCTCTCTCATTAGATTATTCTGCGTGGGACTGCGTTCTAGAAGAGGCTGACTCACTGGATGGAGGTTCTTTCGAAACGGAAACAGATGAAGCAGCAGCATATACAGCATGCGAGTTTTTAACAAGTATGGAGACTCCCTCACATGAGGAATTTGTCATCGGTGATGATGAAGGCCGGCAGAGTCCCGTGTCGTGGACTTCACTCTTTGCTCTACAGACTGAG
Seq A exon
GTATTTATCTTATTTCTGCTTAAGTCTGTGGTCAGCTCACTTCACAGTTTACACCAGTGCTTCTCAAAGCAGTTGGTCAGAGAACAGTTCGTTCCCAGTCTAGTGGTTCAGGGCACGTGTCAGTGTGGGAGGCTGTATCTCTCAGTGAATGGTCAGCGGGACCAAACTCTCCTCTGCATGTGGTGCTGGGGGTGTTCGTCATGCTTTGTCGGTGACTATTAACATTCCTCAGTCGAAAAAAAAGGGGCCATGGACTTATTTTCTAAGTTCTCGCATCGGGAATTGAAGTTGCTAGAAATTTCCTCCTGCCCAGTAAACATAGGTGTGGTAAATATTCTAAATATTTTCCTATCGGTCTAGAGATACGGTTAGCAGCAGCAAATATGTGTGCTGAGGCGCTCAAGGAAAAGGAATCTTAGCAGTTGAGAGCCAAGGGATACCGCAAAGTCACATCGTGCAACAAACCTCACCTAAGAGTTACTGGGAGGGAAAAACACGTGAGAAACAACAAGAGGTCTGAGAAGGAAAGCCAGGCTTATATAGGATATCGGGGAGGTGGGGACAAACTTTCCAGGGTGAGGATTGGTGGGATTTTAAGTCCTTAGTCTGGTGGAGCTCAGGCATTGGTCGCTTTTCCTGTTCCGAGATTGGTGGATTTTCGTGATCAGGTGGGTTTCTGTGGCAAGCTCAGGGCCTGGTGGGATTTTTTTGGGTTGTTGTTGTAGAGCAGGTCCTGCTCTGGGAATAACAGAGATTGTTAGGGAAGTCTGGGGGGCAGGGCCTGGCACCACTGGAGCTCCTCAGGTAGAGGCCTGGCCGTGTCCCTGCCTTGCTGGTTTACAAAGTTTACAAAATATACAAAGTTTACAGAGGGAGTCTGAGGTAGCTTCGGTTGTCCTGTAGTAATTTGCAGCAGTGTGGAGGGGCACAGTACTCCATCTGTTGAGCTAGTTAACACCTTGTATCTCTGACTAGCTCCTGCTCTGGCATTGAGACCCAGGCTCACATGTGCAATCTGAATATGGGGCATCACATCCGTAGGCAAGCATTGAACCCCAGAGCTATAGTCCTAATCTTTTCTCATTCTTTAAAATTTCTTTACTTGTGCGTATATGTACCTGAGTCTGTGTGTACACGTGTTCATGTAGGTGTGAGTGTGTCTGTGTGCATGTGCACATGGTAGACAGAGGACTACGGTGAGCATCTCCCTCAGTTGCTTTCCACATTATTTATTTTTTAATTTAAAATTTTTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCAAAAAAAAAAAAAAAAATTTTTAATCTATAACCAGGTATAGTAGTACTTATCTTTAATCCCAGCACTCAGGGAGGCAGAGGCTCTATGAGTTCCAAGCCAGCCTAGTCTACATAGTGAGTTCCAGGATAGCCAGGGCTATGTAGAGAGACCTTGCTTCAAAAAAAAAAAAAAACAAAAAAAAATATATAAACAAAGAAATGGGGAGTAGTTTGTTTGGGATTTCAGGGGAAAGGATTTATTTCTATTTCTGTGTATGATGTGTGTATTGGGGGGGGGAGTGTCCATGGAGTCCAGAAGAGTGTGTGTGCTTGATCCGCTCGAGATAGGGTTATAAGTACTTAGTTACTGAAGTCAGGGCCTCTGGAAGAGCAGGAAGTGCTCTCAGTCCTCGCTCCACCATCGGGGACTTGTTCTTTTTTGCTGAGATAGGGTCACATATAGGAAAGTATCTTTGGGAACATCTCCAGTGGATCAGTTTTAGGAGTCAGTGCACTGACCCTCCAGGTAAAGGAGCTTGCTGCATAGGCTTGATAACTTGAGTTCAATCCCTGGAACTCACAGTGTAAAGAGACTGACTTCCAAAAGTTTGTCTCTGACCTTTACACTGTATGCATGTACACATGCATAATCCCCCACACTATGTACATGTCTGCATATTCTCTCTCTTTCTCTTCTCTCTCTCTCTCAGAAATTTACAGTCTCCATCTGCTAACCTAGGCCTAGTCCTGGAAGTTTCTGGCCTCCGTACAATCTAGGCCTACAATGTTTTCAGCCTCTGAGACTTGCTACTTGTGGTGGTTTGAATATGGTTGGCCCAGGGAGTGGCACTCTTAGGAGGTGTGGCCTTGTTGGACTAGATGTGTCACTGTGGGACTGACCCTGGTCCTAGCTGCCTGGAAGCCAGTCTTCTCTTGTTTGCCTTCAGAACAAGATGTAGAACTCTCAGCTCTTCCTGTGCCAGGAAGCTGCTATGCTCACACCTTGATGACGTTAGACTGAACCTCTGAACCTGTGAGCCAACCACAATTAAATGTCGTCCTTTATAAGAGTTGCCTTGCTCATGGTGTCTGCTCACAGCAATGGAAACCCTAATTAAGACACTACTGAATGAGGTCACCCCTTCCTAGTTCTCTCTGCTGTCTGGCAAACTGATTTAACTCAGCTGTTCTGACGCAAACTCCTCTCCAAGCTGACTGATTCAATTTGGTTTCTTTCTCAGCCTCTTGATTGTTTTGCTCTACTAAGCTTCATACTATCTTTGGCAATCTGTTCTAATTTTCTGGTTCCTTGTCATTCTCTGGCTCATTCTGTCTTCATCTGTGTCTAGCTCGTTCTCGCTCTGCAACCTGTCTCTCTATCTAACTGTCCCTGTAAAACTGCCTCCTCTCCCCCTCTCAGTCAGCTCTTCTTCTGTTCCCCTGAGAGTTGGGTATATCCTATCCTGTCAGATCTCTCTCAGATTTGTCACTTTGTTTGACCCTCAAATAGACATCACTTTCAAACATGGCTGCCTCCTTCTACAAACTAACTTTACCTTCATTGTTTGGGATTAAACGTGTGTACTAAGGGTGTGTCTATATTCCAGCCAGAGGGATTAAAGATGTGTTCTAAGGCTGAGACACACCACAAGTAGAAACACATTTTTCCAGTTAGCCACACAATCTCAGGGTTTGCAGTGTGATCAAATATCCTTTGTCAAATGTATATTTTTAAATACTGAAAAAGAAATCATGCTAGAGAAGTACAGTATGACGTAGGACCTATGACTAACAATATAACTTTTTTTTCTTAATTTTACAG
Seq C2 exon
GATGGTTTTTGGAAATTGACACCAGAACTAGGACTAATACTAAAACTTAATGTAAATGCTCTGCTCAATTCTCTTGAAGAGAAGGGCATTCGATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061152:ENSRNOT00000078051:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]