MmuINT0115469 @ mm10
Intron Retention
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56647174-56652347:+
Coord C1 exon
chr14:56647174-56648949
Coord A exon
chr14:56648950-56652247
Coord C2 exon
chr14:56652248-56652347
Length
3298 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
TTTTTTCCTTAATTTTACAGAAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
CCCGTTTCCGTCTCCTCTGAAGTGAATGAGAAACCATCACTGCTACTCGCTGCTAAAAAAAGGAAAATAAAGACTATAAAGAAGTGCAGTCTAGACATTTCTGAAGATTTTGAAGACAGGACTGCAGTAGCACAGTCACCTGCAACAGCGCAGTCTCTTAATTTCCACCTGCCTCTCAGTGTCCGCCCACAACTGAAAGCTGTGGAGCAGCAGCTGCATGGGAACCGGCTGGAGCCAAAGCAAAGGGGAGGATTTCGAAAACTGCTCATGGCAAAGAAGTGTCGAAATGTGCCTGATTCCCTGGTTTCCTCTGCTCCTGCAGTCACAGCTGAGTTTTCTTACCTTTCTGCCTGCAGCTCTAGTTCTGCCTTCCTGTCTCCTCTCTGCGACATCCCTTCTTCTCTTCCTCCCCATCCCCTTGGTGGTACCCACCCTCCTCCCCCTCTTCCTCTCCCTGATGGCACCCATCTTCCTTCCCCTCTCTTTGGTAGCACCCACCCTCCTCCCCCTCTCTTTGGTGGCACCCTTATTCCTCCCCCTTCTTCTCTTTTTGGTGGCACCCATCTTCCTCCCCCTCCCCCTCTCCCTGGTGGCACCCATATTCCTCCCCCTCCACCTATCCCTGGTGGCACCCTTATTCCTCCCTCTTCTTCTCTCTTTGGTGGCACCCATCTTCCTCCCCCTCCCCTTCTCTCTGCTGGCACCCATATTCCTCCCCCTCCCCTTCTCTCTGCTGGCACCCATCTTCCTCCCCCTCCCCTTCTCCCTGCTGGCACCCATATTCCTCCCCCTCCCCCTATCACTGGCAGCACCCACCCTCCTCCCCCTTCCTCTCTCTTTGGTGGCACCCATCTTCCTCCCCCTCCCCCTCTCCCTGGTGGCACCCATATTCCTCCCCCTCCACCTATCCCTGGTGGCACCCTTATTCCTTCCCCTTCTTCTCTCTTTGGTGGCACCCATCTTCCTCCCCCTCCCCTTCTCCCTGCTGGCACCCATATTCCTCCCCCTCCCCCTATTACTGGCAGCACCCACCCTCCTCCCCCTTCCTCTCTCTTTGGTGGCACCCATCTTCCTCCCCCTCCCCCTGCTGGCACCCAATTTTCTCTTTCTCCTATAGGATTCATACCACCTAAGTTGGGTCCACCTAAGCTTAGCCACAGCCATAAACTTGTCGGAGATACCAACATCCATGACTCAGAGCCACCTCTCCTGGGCTTTAAGGATTTGTGCTCTAGAGATATGGGCTTTAGTTGTGGTACCGCTTTCTCAGGTAGCTTTGCTAGTTCAAAGGATTTTGATCCAGGTAAATTTTCCCAAGGCCCCAACAACATCAGCTTCTCTCCCAAAGCCCCTGAGATGGGCGTTCTTCACCAGTCACCTTTTTGCAGTCCTCCTAAGCCACCTTCTGCCCCTCCTCTTGTCACCAACGTACTTTGCTCTGAGGCTCCTCAGAGCTATTTTCTTAATTTGCAAAGTGCCGCAGTGCATCAGAGCCCTAATAACAGAGTGTCAGAGATCATCATGGAGTCAGTTGAGTCATCTCTCCCATCAGATTACTCTTCCAGAGATGCGTCATCATACTTGGCTCTAGAAGGGGCAGAAGACTCCTTGCTGGGTGGAAGTTCTTTTGAAACCGATACAGATGAAGCAGCAGCATTTATAGCCAATGATCTTTTAACAAGTATTGAGACTTCCTCAGATGAGGAATGTGCCTTCTGTGATGAAGACCAGGAGAGTCCTGTGCCGTGGGCTTCACTCTTTGCTCTACAGACTGAG
Seq A exon
GTATTTGTCTTATTTCTGCTTAAGTCTGTGATCAGCTCACTTCACAGTTTGCACAGTGCTTCCCAAGGCAGTTGGATGGAGAACAGTTTCTTTCCAGTCTCGTGGTTCAGGGAGCATGTCAGCGTGGGAGTCTGCATCTCTCAGTGAATGGTCACCCTCTGCATGGTGCTGAGTGGCATGTGCCATGCATTGTTGGTGACATTAACATTCCACAGTTGAAAACTAGCATCCTGAAGAGGCCATGGACTTACGTTCTAAGTTCTAGTACTGGGAATTGAAGTTGATAGAAATTTCCTCTTGCCCAGTAAACATAAGGGAGGTGAGTATTCTAAATATTGTCCTAGAGGTAGCAGTGAATGAGTGCTGCAGCTCCAAGGGAAAGGTATCCTGGCATTGAGAGCCAAGGGATACCACAAAGTCACACCTCACAACAAACCTCGAGTAAGAGTTACTGTGAGGTTAAAAACCCAGGAGCGTGGCTGCCTCTGCTGAGGGGAGAAACAGCAAGAGGACAGGAAGGAAGCCAGACTTATATAGGATGTTGGGGAGGGGGCAAGCTTTACAGTGTGAGGATTGGTGGGATTTTAAGTCCTGAGCTTGGGAGAGTTAAGGCATTGGTAGTTTTCCTGTTCAGAGATTGGTGGATTTTCATGATCAGGGATTGGTGGGTTTCTGTGGCAAGCTCAGGGCCTGGTGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGCTGGACCTGCTCTGGGAGTAACAGAGATTGTTAGGGAAGTCTGGGGGCAGGGCCTGGGCCACTAGAGCTCCTCAGGTGGAGGCCTGGCCACTTTTCCTGCCTTACAAGTTTACAAAGTATATAAAGTTTACAAGGGGAGTGCAGGGCTGCTCCTGTAGTAGTTTGCTGTAGTGTGGAGGGGCACAATACTCCATCTCTTAAGCTAGTTAACTCCTTGTAAGCTTCTGCACTGGCATTGAGATTCAGGCTCACATATGCAATTTGAATATGGGGCATTGCATCTGTAGGTAAGCATTCAGCCCCAGAGCTCAGCTCTTACTCTTACTCTTGCTCTTGCTCTTGCTCTTGCTCTTGCTCTTGCTCTTGCTCTGCTCTCTCTCTTTGTTGTTGTTGTTGTTGTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGGACCACCACCACCCGGTTATCTTTTCTCATTTAAAAAAAATTTTTTATTTGTGTGTGTGTGTGTATACCTGAGTTTGTGTGTGCATGTGTTCATGCAGTGTGAATGTATCTGTGTACATGTGCACAGGGAAGCCAGAGGTCTATGTATGTACCTGAGTTTGTGTGTACACATGTTCATGCAGGTGTGAATGTATCTGTGTACATGTGTGCATGTAAGCCAGAGGTCCATGGTGAGCATCTTCCTCAGTTGCTTTCCACATTATTTATCTTTTATTTTAAAAGTTTAACTTATAGCTAGGTCTAGCAGTACTTACCTTTAATATCAACACTCAGGAAGGCAGAGGCAGGCAGATCTCTATGAGTTCCAAGTCAGCCTAGTCTACATGGTGAGTTCCAGGATAGCCAGGGCTATGTTGAGAGAACTTGTTTCAAAAAACAAACGAAAACATAAACAAAGAAGTGGGGAGTAGTTTGTTTGGTATTTCAGGGGAAAGAGTTTGTTTTTATTTCTGTGTGTGATGTGTGTATAGGGGAGTGCCCCTGGAATCTAGAAGAGCGTGTTTGATCCCCTCAAGATAGGGTTACAGGTGCTTATGAGCAGCTGAATATTGTTACTGAACTCAGGGCCCCTGGATGAGCAGGAAGTATTCTCAGTCATTGCTTCACCATCTGGAACTTGTTCTTTTTTTGTTGAGATAGGGTCACATATTAGGAAAGTAACTTTAGAAACATCTTCAGTAGATCAGTTTTAGGAGTCAGTGAGCTGGCTCCGTGGGTAAAGGCGCTTGCCACATGAGCTTGATACCCTGAGTTCAATCCCTGGGACTCACAATGTAAAGAGAACTGACTTCCAAAAGGTTGTCTCTGACCTCTACACTGTATGCGTATACACACGCATATTCCCTACACTATATACATGTCTACATATTCTCTCTCAAGTTTACAGTCTCCATCTGCTAACCTAGGCCTAGTCCTGGAAGCTTCTGGCCTCTGTACAATCTAGGCCTAGAATATTTTAGGCTTCTGAGATTTGCTACTTGTGATGGTTTGAATATGTTTGGCCCAGGGAGTGGCACTATTAGGAGGTGTGGCCTTGTTAGAGTAGATGTGTCACTGTGAGCATGGGCTTTAAAACCCTCATCCTAGCTGCCTAGAAGCCAGTCTTCTCCTGCTAGCCTTCAGAACAAGATGTAGAACTCTCAGTTTTTCCTGTGCCAGGAAACTGCCATGCCCCCACCTTGATGATAATGAACTTAACCTCTGAACTTGTAAGCCAACCTTAAATGTTGTCCTTTATAAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAATGGAAACCCTAACTAAGACACCACTGAATAAGCTGAACCCTTCCTAGTTCTTTCTGCTCTCTGGCTGGGTGATTCAACTCAGCTGTTCTGACTCAATCTCCTCTCCTAGGTAACTGATTCAACCTGGCTTCTTTCTCAGCCTCTTGATTGTTTTGCTCTGCTTAGCTTCATACTATCTTTGGCAATATGTTCTAATTTTCTGGCTCCTTATCATTCCCTGGCTCATTCTGTCTTCACCTGTGTCTAGCTTGTTCTTCCTCTGCAACCTGTCTCTCTATAACTGTGCCAGTAAAACTGCCTCCTCTCTCCCTCTGCACAGCTTTCTCTTAAGTCAGCTCTCCTTCTTCTGTTCTCATGAGAGTTGGGTATATCCTATCCTGTCAAATCTTTCTCTGATTTGTCCTTTGTCTGCCCCTCAAATGCTTCCTTCTACAAACTAACCTTACCTTCATTGTTAGAGATTGAAGGTGTGAGTAAGGGCATGTCTGTATTCAAGCCAGAGGGATTAAAGATATGTTCTAAGGCTGAGCCACACCACAACCAGAAACCCGTTTTTCCAGTTAACAATACAATCTCAGGATTCACAGTGTGATTAAATGTCCTTTATCTAATGTATATTTTAAATACTGAAAAAGAAATCATGCTAGAGACTTACAGTGGACCGAGGACCTAGGACTGACAATATAACTTTTTTCCTTAATTTTACAG
Seq C2 exon
AATGGTTTTTGGAAGCTGACACCAGAACTAGGACTTATATTAAACCTTAATGTAAATGCTCTGCTCACTTCTCTTGAAGAAAAGGGCATTCGATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509:ENSMUST00000161553:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063467=Drf_FH1=WD(100=22.1),PF063467=Drf_FH1=WD(100=26.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types