GgaINT0108013 @ galGal3
Intron Retention
Gene
ENSGALG00000017146 | PARP4
Description
NA
Coordinates
chr1:183550187-183552216:-
Coord C1 exon
chr1:183552115-183552216
Coord A exon
chr1:183550290-183552114
Coord C2 exon
chr1:183550187-183550289
Length
1825 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TATCTTTGTTTATTCCACAGGAT
3' ss Score
10.44
Exon sequences
Seq C1 exon
CTACAACCGAGCTGTTTTATAACAACAGAGAAAGAAAGAAGCCAACAGAAACTTGAGTTTACTCCTGTAATGTGGGAAGAAATTTTTGATCTCCAAAATCAG
Seq A exon
GTACAGTACCAACAGTCTTTTTGTGCATTACTTAAAGTAAAACACACGTAGAAAAAAAAAGTATTTTTACTCTATGCCTGTCCTGCGATAAGCATTTTATAAATGTTTCTGTTTTGTTTCCCTTATAAACGGGTCTTAAGAAGTACATAATTACCTCAAGGTCATGTTATGTCTTTTTGCTCTCACAGGCAACTTATTAATGGGTGCCTTAGAAGCAGTGTAGTTAATGGGTGCCTAAGAAACAGAGCCTCTGATTTAGAGCTTCCATCAGTTTGCAGCTTGGAGACTTCCTACAATGTGTATGAAAACACGTAGGGGAAGACAGGCAGAAATAGTAGATGCAAATAATGCACATTAAGCAAAATACTTAAAACTAATTGAGGTTTGGAGAATTGGAGCGAGTGTGGTGGGAACTTTTGTAGGACAGTCAAACCAGCTGAATGGCTGGTGAATTAAGGGCAAGCAGAATTGAACCAATACTGTCCAGGAATCCTGCAAGTAGGGGTCAAAGCAGGTAACATTTCGCCTCGTCATTTGAGTATGTCCCCTGCAGTGGGACAAGTCTCTGTTCCACCTTAACCATCACCAATTTGGTGAGCTGACTAAACTAGAGGGTGAGGTGATGATCAACGACCAGATTGTGGGCCACACATTTGATACCTGTACATAAGAAACAGAAAGAGGTCTCCAGGTGTATTGTATGATCCAAGTGAAGAAACCACTGTGGTGTTCCCTCAGTGGAAACTCCTGTTGTGCGTCCATGGGGACTGGCCATTCAGATTGGTGATTTGTTCTACTCCCTTTTGCTGTGATCCAGTATGGCAGTTTATATGCAAAAATAGGAAAGTAAAACTAACTTAAGCATCAAGAAGAGATACATACCTGCCTATACTTTTGATGGGTTACCTTTATCAAATTGTTTCTGCACATTGAACTATTACCACATGCTGCATGTGGGGATACAATGGGGAACAGACTTGTGATTGGCTTAACTCAAAAATGAGTTTCAAGATTCCTTTTCTTTTTAAGCAGAACTGCCAACTGTTGAATTTTAGAAAGAAAAAGTTTCTCACAGGTTTTTACACTGAATAACTTTAGTATTCTAACAGAATCTCATTTTTTACATAAATTGGGTGCTTAATATTTAAAGATTCATTTAAAATTATGTATTGTCTTCTAAATTACCTTAAATGAATCTATAAATTGCTATCAATTTGCCTACAGTTATAGTTATCTATGACATAATACTGCAAGGACAGATAAAAGTTTTGGAAGTAAGTAACACTGAAGAATAAGTGGTTGAATATCCTCTCGAAAGCCTGTCTTCTATCTCATCTGAGAGTAGCAAACTGACAGTTTCAATCAGTTCTCTAATTTTTGGCAGGAAAAGGCAGATAAAATAGGATGGGTTTTGTTAATACTATATTGAACATAAACAGTAAACTAATTTTACAGAGACTTTACAGTCCCTCTAGAGGAGAGAGATCCATTATTGCTTCGTTAGGGCAAGACAAATGCTTATGCACTCTGAAAGAATTGAAATATGTTTGATGCGGCTATGTTGTCATTGTGCATAGTTTGTATGCAAGGGAGTTCAAAATTCTGTTTGACTTTTTTCATAGCTTAACTACAGTTTCCCAGATCAAGTAGGAACATTGAGTGGTACATCAAAGGCTTTTGAAGTTCATGTGAACTTCTGCTTTGGTGTTTGTGAAAGCTTTAAAAAGCATCTTTAAATACTTGTCCTTTGTTTTAGGTTGATCCTTACAAATATACTTTCAGTGTTCTCAGTCTCTGCTTATCCATATCTTTGTTTATTCCACAG
Seq C2 exon
GATGGCTCTTGGAATCTCAGTCCACAGTTGGGAAAAATCTTGAAATTTGATGTTGATTATTTAATTAATCACTTCCTTATTAGAAATGGCATTCAGTCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017146:ENSGALT00000027691:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGCTGTTTTATAACAACAGAGA
R:
CGAGTGACTGAATGCCATTTCT
Band lengths:
200-2025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]