HsaINT1026179 @ hg38
Intron Retention
Gene
ENSG00000102699 | PARP4
Description
poly(ADP-ribose) polymerase family member 4 [Source:HGNC Symbol;Acc:HGNC:271]
Coordinates
chr13:24431377-24435474:-
Coord C1 exon
chr13:24434395-24435474
Coord A exon
chr13:24431477-24434394
Coord C2 exon
chr13:24431377-24431476
Length
2918 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTGTTTCCTTAATTTTGTAGGAT
3' ss Score
10
Exon sequences
Seq C1 exon
TCTCTTTTAGCATCCTCTGAGTGGCCAGAATTACGTTTATCCAAACGAAAACATAGGAAAATTCCATTTTCCAAAAGAAAAATGGAATTATCTCAGCCAGAAGTTTCTGAAGATTTTGAAGAGGATGGCTTAGGTGTACTACCAGCTTTCACATCAAATTTGGAACGTGGAGGTGTGGAAAAGCTATTGGATTTAAGTTGGACAGAGTCATGTAAACCAACAGCAACTGAACCACTATTTAAGAAAGTCAGTCCATGGGAAACATCTACTTCTAGCTTTTTTCCTATTTTGGCTCCGGCCGTTGGTTCCTATCTTCCCCCGACTGCCCGCGCTCACAGTCCTGCTTCCTTGTCTTTTGCCTCATATCGTCAGGTAGCTAGTTTCGGTTCAGCTGCTCCTCCCAGACAGTTTGATGCATCTCAATTCAGCCAAGGCCCTGTGCCTGGCACTTGTGCTGACTGGATCCCACAGTCGGCGTCTTGTCCCACAGGACCTCCCCAGAACCCACCTTCTTCACCCTATTGTGGCATTGTTTTTTCAGGGAGCTCATTAAGCTCTGCACAGTCTGCTCCACTGCAACATCCTGGAGGCTTTACTACCAGGCCTTCTGCTGGCACCTTCCCTGAGCTGGATTCTCCCCAGCTTCATTTCTCTCTTCCTACAGACCCTGATCCCATCAGAGGTTTTGGGTCTTATCATCCCTCTGCTTCCTCTCCTTTTCATTTTCAACCTTCCGCAGCCTCTTTGACTGCCAACCTTAGGCTGCCAATGGCCTCTGCTTTACCTGAGGCTCTTTGCAGTCAGTCCCGGACTACCCCAGTAGATCTCTGTCTTCTAGAAGAATCAGTAGGCAGTCTCGAAGGAAGTCGATGTCCTGTCTTTGCTTTTCAAAGTTCTGACACAGAAAGTGATGAGCTATCAGAAGTACTTCAAGACAGCTGCTTTTTACAAATAAAATGTGATACAAAAGATGACAGTATCCTGTGCTTTCTGGAAGTAAAAGAAGAGGATGAAATAGTGTGCATACAACACTGGCAGGATGCTGTGCCTTGGACAGAACTCCTCAGTCTACAGACAGAG
Seq A exon
GTATGTGTCTTATTTCTCCTTAAATCTGTGGTTGGCTGGCTTCATAGTTTAGAACGGGGCTCCTCAAAGCAGCTGGTCAAGGAACCGTCTATCATCAGTCTGTAGTGAAGGAAGGGGTTGTACACTGGGTATAAATCATACTGCTTCCTTCATTGAGGAACTCTTGCTACAAAACAAAACAGACAGCTGAACAAAACAGTGTGCTTGATGCTGGCTGGTGTTTCTCTACAAACATTAGACCAGAACCTCATGCTGGTGAATGTTACTATTCCTCACATGAAAATGAACATCTCTGAACAGATGATGGGGTGAGATCTTAATTTCCTAGATTCTAGAACTAATGGATTGTAATCCACATAAATTTCCCACTGTGAAGTAGAGCACAAGCACTTGTACCTGTACTCTAAATATTTTCACATAGGTCATGGGAATACAGATATTATTCAACATGTATATTGTGTTAGAGCTTATCACTCCATTTGTTAAGCTGATAAACACCCTGTAGATTTGGCCCCATCGCTGGTACTAAGACCCAGTCCTGCATCTGTGATTACTTGTTTTGGTGTCAAGTAGTTTAGTGAAACGGAAAGGGCTTGATGTAGTATAAAAGTAAGCCTGAGTCCCAGCCCACTTTGTGATTTGGGGCAAGTCAGGTAACCTGTCTGAGCCTCAGCTTCCTCATCCATATAGTGGAGATAATGATAGTGTCTACTTCACAGAGTGGGTTTGAGATTTAAACAGGATAATCACAGCTGCCCAGTTTCCCTACTTGAGACAGTGCACCCAAAAGCCTGCCAGGAGCATACTGCAGATGGTCAAGAGTGTGGATCCCACGGCCACTCCTGGCTCTGCTGCTTGTTAGCTGTGAGACTTTAGACAAATTGCTTTACCTTTCTGTGCCTCCATGTTCTCATCTCCAGTGTGGGTGTGATAATAGTTGTTGGGGTGATCAGACCCAACACCAGGTCATGGGGGTGACAAAGTCCAGTGGAGTCAAAGGATTGAGAAAAAGACAGTTTGAGAGAGAAAGGTGGGACACCAGTATGCCATCACTATGGTGGAGGCTGCGAAGGCCCCGAGCTCTGGGAGCCCACGGTATTTATTGATAATCCAACAAAGAAACAGATGGTGAGAATGTGGAGGTCAAAAGGACACGTTGCATTAAGTACATGATTTACAGCTGCGATGGTTTAGCATTTATATGGAACATATTCTGCTACTTGAGATAATGGGAACAGGAGCCTAGGAAGGCTAGAAGCAAGGAGCCAGCAAGTCTAGACACATTCCAGAGGACGTTACGCAAGCCCTGCCTCAGTTTCCCTCCCAACACTCAGCTTTTTCCCAACAATAGTACTCCACAGGAAGTGGCTAAACATATCAAAGAACAGCACCTGGTACCACTTCTCTATGGGTTGGTACATATTATCACTGCGGTCATTTTTCAAGGTATTGCCATAGATTCTTCAACCTGTGCACCTGCCTAGGACCACACCCTGCTTTCTACTCCCTGTGTTGGTTTCCCTAGGGTCTTGATTCTGTCTCCGTTGAGGTTAATATCCCCAAGCTCAGGCTTAGCACATTCTCCTGTGCATGTGATGGGGCAGGCAGATGATGGGGGATGCAGGGAAGGTAGTTTTAAAGTGCATGTTTAATATAACAATTTTATGCTTAGAAAAAACTGTCATTTTCATGTTTCAGACTACATCAGGGTACATTTTTATGTTAAACCAAAGGAATCATGCTGGAGATCTACTGTACAATACAGGGCCTATGATTGACAATCCGATGTGGTATACTGAAGCATTTGCTAAGAGGTCTATCTTATGTTAAGTACTCTTTCCACAAAAGGGAACAAAACAAAGCAAAAGGGGTGGAAGGAAAGTTCTGGGAGTGGTGGCTAAGTTCATGGCATTGATAAGTGATGGTTTGATGGTTTCACAGGTGTATATTTAACTCCAAACACATCAAGTTGTATACGTTAAATGTTGGTGACTTTTTGTATGTCAATCATATTTCAATAAAGTGGGTTTTTTTTAAAGAGGGAATCATGCATGACATATACTTTAAAAGCTTGAGAAATACCGGTTCAATGCTCATTGCTAGTTGACAACCCAGTAGGGTGACTATCGTTAACAATACATTGTATATGTCAAAATAGCTAGAAGAAAATATTTGAAATGTTGCCGACACAAAGACATGATAAATGTTCAAGCTGATGGAGATCCTAAACACCCCGACCTGATTATTTACATTCTATGCATGTATCAAAATATCATGCGTATGTCAAAATACATACAAGTATTATGTATCAATAAAAAATGAAATAAAGCATTGCTAGAAGGAAAAAAGTACCATTTAAAAAAATCTCGGCCGGGTATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATTCTGGCTGACATGGTGAAACCCCGTCTCTACTAAAATAAAAATTAAAAAATCTCTACCCATGAGCCTCTTTCCACACTTTTTATAAGTGCCACCAGATATGTAGTGTTCATAGCATTTATGAGGTTCCAAACAATACTATGTCACTAGTGTATGAAGAACTTTATTTTACAGTAATAAAAATGTTAGAAATGCCTTAATTAACTGAAATAAATGGAAACATTTATCACATAACTTCTTTTTTCATTTAATTTGTTAAAGTTTTATTTTAGATGCAGAGGTACACGTACAGGTTTATTACATGGGCATACCGTGTGGTGCTGAGGTTTGGGCTTCTAATTGTCTTGTTGCCCAAGTAGTGAAAATATGTTTTTCAACCCTTGCCCCACTCCTTCCCCCACTACGTAACTTCTTATGTGATAAAATGTGAATAACATAACTTATTTTTGTTTCCTTAATTTTGTAG
Seq C2 exon
GATGGCTTCTGGAAACTTACACCAGAACTGGGACTTATATTAAATCTTAATACAAATGGTTTGCACAGCTTTCTTAAACAAAAAGGCATTCAATCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699:ENST00000381989:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains