BtaINT0109186 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:6983436-6988792:+
Coord C1 exon
chr6:6983436-6983582
Coord A exon
chr6:6983583-6988666
Coord C2 exon
chr6:6988667-6988792
Length
5084 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
3' ss Seq
TTACACCTTGTTTCCTAAAGGTC
3' ss Score
8.14
Exon sequences
Seq C1 exon
GCTGCTGTGGTACCATCTGCCCAGACCCTTAAAATCACTGACTTCAGCTTCAGCGACTTTGAGCTGTCTGACCTGGAAACAGCACTGTGCACAATCCGGATGTTCACTGACCTCAACCTTGTGCAGAACTTCCAGATGAAACATGAG
Seq A exon
GTAGCAATGTAGTGATGTGCTCTGGAAATTGTGTGTGTGTGTGTGAGAGAGAGAGAATTAATTTCGGATGCTAGTATGGAATGAAGTTTCAGTATGAAATGAAGATGAACGAAGTGTGAATGAAGATTCATATACTGTCACCTAATACAGACCCAGAATGTTTGAAGAGAACTTATCAGCCACTGAGAAGACATGTACTGGGTTCCCACACGTATCAAGCAGCAGGCTGCAGAACAGGGCAGGGTGTTCCCGACAGAGAGCAAGGGGAGGGTCGAGGCGGGGCGTGGAGCGCTGGTCGGGGTGACGGTGGCAGAGCTGCTGGAGGACGGTGAGAAGCAGGCCGCGTGGGTCCTCGTAACGCTACTTAGAGGAATTTGGATTTTATGCTGAGAACAATGGTGAGTCACTGAGGAATCTTAAGCAGGGAAGGAATAAGATCTGGTTACAGAGGTTATGATAACACAGTAGAAAGAAGGACCCAAACAGAGTGAACGCCTTTGGAAATGAGGGAGCAGAGGGGCTGATGTGCAGCCAAGCTCTTGGTTCAGACAGGGTCACACATACGGAGTGAAGATGAAGACGGACTTTAACCCCAGCCAGTTACCTTACTTGCCTCTCAAAAATAGCAAGACTGAGCTCAGTCCCTTCTCATACCAGTTGGGGAGATTTCAGGGAATTCTAGTTTGTTTCATAATGCCTGTGTTATTGCATCAAAGAATAAGGGAGAATAGAAGGGCCTATATGAAAAAGAAATTGAGTAATTTGCCTTTAAAGCTGTCTTTTTTTTTTTCCCAGTCAGTTGCATGTCTAGTGTCCTCATATGGATTTCCTATATGAATATGTAAATACCTTGAAGGCCTCCACTATCCAGCACTCCATTAATTCATAAAATAAAAATTTATTAACAATAAACAGTGTACCCAGCACTGTGCTAGGGACGCACTTTAGTGATGAGTTGTCCCTGATCTCAGAGCCTTACTGAGGTCTGAGAGCTGAGGTCTGAGAGCTGAGCTCTAATACAGTTAAGGTTAATACAGTGTCATTTCTGGTATTACTGGGGGCCCAAATCTGGTTCTTCCTTCAATTTAACCAAACTTTATATTATTCTTGGGTGAAAATACAATCTGTAGACTCTAGTAATAGTTCACTCCTATTAGAGTGTGTTGATTAAGGGATATCATATCATTTAATTATTTCAAGAAGCTCTCAAGAAACATCCTTTGGTTATTATCGTCCCTGTGTTACAAATGAAGAAACTGACATAGCGTGAAAGTGAAGTAGCTCAGTCATGTCCCGACTCTTTGCGACCCCATGGACTGTACAGCCTACGAGGCTCCTCCGTCCATGGCATTTTCCACGCAAGAGTATTGGAGTCGGTTGCCATTTCCTTCTCCAAGAGATCTTCCCAACCCAGGGATTGAACCTGGGTCTCCTGCCTTGCAGGCAGGCAGACGCTTTACCGTCTGAGCCACCAGGGAAGCTCCAGACATAGCAGGATGGAGTAGAAGGTTCTTGGATTTGAGTCATAACTCTACTGGTGATTAGCTCTCATTTCTTTGGGCAGGTAATTGCTCACATTCTCAAGTTTTGTAATCTGTTAATTGGGAATAATAGTATGACTTTCCCTGTGGGGGTCTTGTGAGAATTAAACATGCATCTGTGTGATTGTCTATTTGTATGTGTGTGTATGTGTGCACACCTGTATATTTTGCTTAATACAAAAGTATTAAGTAGAAAGTTAATCCCTTCTTTAAACCAAATTTGACCATGGTTATATTACCCCATAGGGCTCATATATTAAAGCCTTTATTAATGGAATGAAGATCTCATTTAGAGCCAGAAGATCTAAATGTGAGTCTCAGTCCTGCTGCTTGCTAGTTATAGGACTTACATAAATCTAGATAGCAACTCAGGTCGCTTTCCATTCCTGAGAGCTCCCATACTTTGCACCGGTAATAGCTCTGTTGAAAGGGCCTGGCCAGAACAGGAATATGATCCTTGTACCTATTTATGAAATTATTACATAAATTGATTTATATCTTAAAAACATAAGCTCTAAACAACAAAATTCTATATAGCAATTATCCTTCAATTAAAAGTAAATTTTAAAAAATAAGCTTTAAGGTAGCATTTGAGTGTTGGATAAGAAGATAGTCCTTTGAATTTCTCCCTCAGTCTTTTATTTTTACCTTTCCGGAATGTTTGTCCATCAGGCAGGTATTTCTCCTCGGTGTCTCGTTCATCTCCTCTGCTTTTCCATTTGAATAACTACTGTTCTGATTCTGGCCAGTGTCAGCTTGAACGTCTCTATTACTCTTGTTGGCCTTCCTGCCTTGGCGACTCATCTGTTTTATTTCAGATATTACTGTCACTATACATTTCAGATATAATTTTAGGATGATAATTAAAATGTTGCTGCTAGAAAAGATGTTAGCATCATAAAGTGCCCTGACAAAGAATCCTTCCTACTGAAAGATATGACAAATCTTCTTGTCCCTGTTGGCTTCCAGACCTTTTCTCTCCTGTGACGCTCATGGATCTCTAAACAGAGTCTCTTACTTTACCAATCTGCGTGTGCTATGCTTGTTTTCCTTTACTGTCTGTCTTTGACAAGTCACTCCTCCCACGGATGGACAGGATTGTCCACTTCCAAGTCCACTACACTGTGTACCACAGCATACTTTTTCCTTGAAGCATGACGCAAAAGTTTCTATTCCTGGGAAAACTCTAGGACTGACTTCAGGCCACTTGGAATCCTGTTGACAGTTTATAAATTTGTGTTCTCATTTTTACGTGAATTTATTTCCTTTATATGTGTGCTTTTGTTAGTTTTGCTACCGATTGAAACTCTTGAAGGCAGGAGCTGAGCTGTGTTTTCTTTATTTACTTCCTTGCACAGAATCTTAAGTATGTTGCTCAGGACTCAGGAAGCCTTTGTAATTGTTGGAGACCGATTCACTGTACTGAGCATGCTCCCTAGGGTCTTCCAAATTGCTCACAGCTGTTCAGGAGTCCTGTACGAAAGGCCGTATTACAAGTTTGAACATTCCAGGCATAGCCACCAAGCATTTAACAGATCTGACCATAATTTTCCTAAATGTTGTTAAGAACATTCTGATAACAGAATACAAAACTGTACTTGAATCTGGTTACCAATTAGATGCAATGGGGCAGTCGTTGGGTTACTCAGTTTAACAGGCCCATCTTAGTAGAAGCAGAATCAGGAGTTCCCTGGTGGTCCAGTGGTTAGGTCCACTTAGGATGATCAGGTTCAATCCCTGGTCAGAAAACTAAGATCTCACAAGCTGTGCAGCATGGCCCCCCGAAAAAGAAGAGAGTAGTCCATTAGGAATTAGGTTTCATAATCATTTTGTCCATTATTTCCCATTATATGCTATACATGCCTATTTAATTATGTCTACAGATTTTATGATTAGTAGAGAGATATGCCCATAGGTTAAATATCTGGACTTTCCTGCTTATTTTCCCTGATTCTATATTTAATCACCAGAATTTTCTACAACAGGAGTTCCCAGGTGGCTCAGTGGTAAAGAATCTGCCTGCAATTTAGGAGACATGGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATAGCAACCCATTCATTCCAGTATTCCTGCCTGGGAAATCCTATGGACAGAGGAGCTTGGAGGGCTACAGTCCAGGGGTTGCAAAAGAATCAGACACAACTTAGCAACTAGACAATTTTCTATAAGACTTCACTGTATACTTTCTAAACATATCAAAAGAAAGTTAATAGTTCTTACTTAAAATTCTCCTAATAAGATGAACCTATTACCTTCAGGGTCAACTTTATTCAGAAATGGTCATGCTGTAGTGTATTTCAGGTCAGCACATGTCAGTCTTAGCCTTTGAAAATCCTCTGGGAAATATGGTTACTCAGGGGTGGGTAAAAGAGCTTGGGGACATTTGGGTTCCTTTTATCAGAATTCTCTGTGAACTGCATCATAGAACAGGAAGAAAGAGACCTGAGAAGAAAAGGGAGGATATGAAAGCATTGATTTTTCTGCCAAATCCTCTATAAGCAATTTTGTACCAACAAAGAAGAAACCTTGTTTTTTGGCCTACTTTTGCAGCCAATCAAACTGTGTTGAATATTATTAAAGCAAGATTCTTTTCCCTGGTACTTTTTCCATTCCCCAGAGCAATGGCTTTTGTGTATGAAATATCCCCATAAATATACATAGGGAGAAGCACATAGTTATTTTTAGAGATCCCCCAAAGCATAGTAAATCATTCAGAATCGAAGAGAGGCCGACTCTGATGATAACACAAACACAAAATTATTATGCTTAGGGCCCATGAGTCCCCAGGGATTTTGTTAAATCCACCACTTTGGAGTTGAATTAAATAAACCTAGCTTGTGAGATTTTCTGAACAGTCTGTCCTTTTTTTCTCCACCTTTTAAAATACATAGATTAAACACACACACATATACACACACACCAGGGCTTTATGTGTGTGTGTGTGTGTGTTTAATTACTTCTTGATAACCAAGCAGTAACTCTGCCTGAATATTTAAGAATCGTTTAAAGGGACAGAGACTGTGATGTGGAGTTTTAGTTTGTCCCTGGGTGTGTGCTGTGTGCCCTGCCCCCAGTCTGTCCCCAGAAGGGCCTCATGAACACCTCTGCGGACGCACAGAAAGAGGGCGTGAGAAGTGGAGAGCAGCTGCCTGCGAGCTCCCTGCGCATGGGTTCATGCACCTGTGACTGGACTGTCCCAACTGACTACACGTGGACATAGTATCTTCTAAAAAGCTAGTCTGTGCCCTGCCTTTTACATCTAATTTAGCTGGCACCGTGCTTTGCATGGTGGACTCTGGAATCAAAACTCTCAAGATCTGAATTCTGGCCCCATCCTTCACATGCACCGTGGCCTCAGGCAAGCTTCCTCTCCGAATGCCAATCCCGTCATCTGAAGTGCGTCCCGCAGAGCCCTGGGGTCAGATGTACACGCTTCGTACAGTGCATGAAGTCAGTGTAGGGTAAGCGTTAGCAGTTATTTTGACTACTTACACCTTGTTTCCTAAAG
Seq C2 exon
GTCCTTTGCAAGTGGATTTTAAGTGTGAAGAAGAACTATCGGAAGAACGTCGCCTATCATAATTGGAGACATGCCTTTAATACAGCTCAGTGCATGTTTGCGGCACTAAAAGCAGGCAAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888:ENSBTAT00000014479:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0023314=PDEase_I=PU(9.6=54.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]