BtaINT0109205 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63219096-63219528:-
Coord C1 exon
chr7:63219463-63219528
Coord A exon
chr7:63219243-63219462
Coord C2 exon
chr7:63219096-63219242
Length
220 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGACTCCATGTTTCATACAGCAA
3' ss Score
6.06
Exon sequences
Seq C1 exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCGTGGGAATGCGAGGAAGAAGAACTGGCTGAGATCCTG
Seq A exon
GTGAGCTGGGCAGCAGCGCCGGTCCTGACCTGTTGCAAGCACAGGGCGTGCGTGCCCCAAGCATGTGTGGGGAGCGTCTCTGCCAAGTGTGGCCCTTGCCACTCTGCTCTGATCCTTCCAGCAGACTCAGATCAGGGACAGGGCTGGTGGGGGGTGGGGTGAGGGAGGGACCAAGGGATTCCTCATGTGCTCCAGTCACTTGACTCCATGTTTCATACAG
Seq C2 exon
CAAGGAGAGCTGCCAGATGCAGACAAATATGAAATTAATAAATTCCACTTCAGCGACCTGCCCCTGACGGAACTGGAGCTGGTGAAATGTGGAATTCAGATGTACTATGAGCTCAAAGTGGTGGATAAATTTCACATTCCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945:ENSBTAT00000036662:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGTATGGGAAGGAGCC
R:
TCCTGAGGAATGTGAAATTTATCCAC
Band lengths:
204-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]