HsaINT1026475 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149896356-149896776:-
Coord C1 exon
chr5:149896711-149896776
Coord A exon
chr5:149896503-149896710
Coord C2 exon
chr5:149896356-149896502
Length
208 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGACTCTATTCCTTATACAGCAA
3' ss Score
7.37
Exon sequences
Seq C1 exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCATGGGAGTGTGAGGAAGAGGAGCTGGCTGAGATCCTG
Seq A exon
GTGAGCTGAACCGGGGCAGCACGAGCCCCGATGTATAACAAGTGCAAAGTGCTCCTGAGCATGCAGGGGTTTCTCCTTGCAAAGCATGTTCCCCATCACTCTGTTCTGATCCTTCCAGCAGACCCAGGATGGGGACAGGGCTGGACAGGAGGTGGGCACCCAGAAACACTTCATGTTTCCTAATCACCTGACTCTATTCCTTATACAG
Seq C2 exon
CAAGCGGAGCTGCCAGATGCAGATAAATACGAAATTAATAAATTTCACTTCAGTGACTTACCCCTAACAGAACTGGAGCTGGTAAAATGTGGAATACAGATGTATTATGAGCTCAAAGTGGTGGATAAATTTCACATTCCACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGAGGTGTATGGGAAGGA
R:
TGTGGAATGTGAAATTTATCCACCAC
Band lengths:
205-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains