BtaINT0109226 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108842023-108842674:+
Coord C1 exon
chr6:108842023-108842088
Coord A exon
chr6:108842089-108842527
Coord C2 exon
chr6:108842528-108842674
Length
439 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGA
5' ss Score
3.96
3' ss Seq
CCCCACCGTCCCTCCCACAGAAG
3' ss Score
9.72
Exon sequences
Seq C1 exon
CCAACCAGAGAACGCCTCGGGAAGGAGCCTGCCGACTGCGAGGAGGACGAGCTGGGGAAAATCCTG
Seq A exon
GTCAGAGTCTGGCCCCGCCCCGGGGGCCCAAGGAGCCCTGAGCGAGGGGAGGTGCCACCCCAGGTGGCAGAGGGAGGTCCTGCGGTGTCTGTGCTGAATACGCCCGCCCATCCCTGTGATCGCTTGCGTCCGTGTATCCTTCCACCTGCCTGTGTATTCACAGGTCCTTGCCGATATCTGCGTGTGCCCACGCATGTGTGTATCTGTATTTCCCTCACAACTTCACTTGCCCAGCGGGCAAATTCTTGCTGCTGGGCCACTGGCGGGAGAAGGGGAGAGGAAAGGGTTGAACCAGGAGGGGCTGAGAGCACCTCAGGCTGCAGCCAAAGTTAAGAGACACCTGGCGTGTCTGAGGCTGGACAGAGGATCCCTGAGAGAAGCTGAGGAGCAGGCGGGGCTCCGGCGGGCCTGCCCCTCAGCCCCACCGTCCCTCCCACAG
Seq C2 exon
AAGGAAGTGCTGCCCGGGCCCGCCAAGTTCGACATCTATGAGTTCCACTTCTCGGACCTGGAGTGCACGGAACTGGAGCTGGTCAAATGCGGTATCCAGATGTACTATGAGCTGGGTGTGGTTCGAAAGTTCCAGATCCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480:ENSBTAT00000052174:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGAGAACGCCTCGG
R:
CTCCTGGGGGATCTGGAACTT
Band lengths:
212-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]