GgaINT0066433 @ galGal4
Intron Retention
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53322806-53323783:-
Coord C1 exon
chrZ:53323718-53323783
Coord A exon
chrZ:53322953-53323717
Coord C2 exon
chrZ:53322806-53322952
Length
765 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AACTGTTTTGCCTTTCACAGAAA
3' ss Score
8.89
Exon sequences
Seq C1 exon
CCAACACGAGAAAAGCTGGGGAAGGAGCCAAGTGAGTGTGAGGAAGAGGAGCTGGCAAGTATCCTG
Seq A exon
GTAAGGGCAATGTGCGGGTGAACTTGGAAGTGTGGCAAACAGCTATTGCCTGGGTGGAGGCAGGGGAGAGTTGCTGGAGTTGGTAGTTATCAATGAGGCACCTGGTGAAGGGTGAAGGTGAAGCACACCTGCCCCTCCTGTGCTCCGTGTGAGGTTATTATTACCAAGCAGCAGAGAATGCATTCCTGTGAAGTGCCTGCCTAGTGCCTCCTTATCACAAGGGGTTCCAGAGTCCACCTGGGAACACGCCAACCGCCTTGAACTATCATACATTTTGTTCACAAGCATGAATGAGGAACTTTAAGACTTCTCCTGTAAGACCTGACAAGTCTGGAGTCTCCAAACTACATCAAACTAAAAAGAAGACTGCTTAACAGAATGCAAACAGTATCTTGTGCCCGGCCAAAAATGTGCTCCCTCTTCCCCCACTAACAGGGCTATTTTAACAGAGGAAGAGGGAAAATATTTTTGTTCATCTGTACTAAATCCTTGAAGGAAAATATTTACTTATGTAAAAAGTTGTTTATCCTTGCGCATGTAGGTCCTTTGAAAGTAACAGGATTGCTCAGCAGCAGTCCTAACCCTAACCCTGACCCTAACCTTAACCCTAACCCTGACCCCGTTAGGGCTGTTTGTGCGTCACATTCTAAAAGAGACAGCTTCCAGCAGCATCAGACCAATAAGTTTTTATTTAGCAAAACCACTTCCAGGTGTTTCTAGGGACAGCATAAATACCACAGCAACAAACTGTTTTGCCTTTCACAG
Seq C2 exon
AAAGAACAACTCCCAGGGCCCACCAAGTTCGAAATCTATGAGTTCCGATTCTCCGATTTTGACTGCACTGAGCTGGAGCTGGTGAAGTGTGGCATTCAGATGTACTACGAGCTTGGCGTGGTGAAGAAGTTCCAGATCCCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACGAGAAAAGCTGGGGA
R:
TCCTGTGGGATCTGGAACTTCT
Band lengths:
211-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]