RnoINT0108916 @ rn6
Intron Retention
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2335283-2336362:-
Coord C1 exon
chr14:2336297-2336362
Coord A exon
chr14:2335430-2336296
Coord C2 exon
chr14:2335283-2335429
Length
867 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
GCCCACAATCTCTCTTACAGAAG
3' ss Score
7.95
Exon sequences
Seq C1 exon
CCAACAAGGGATCGCCTGGGGAAGGAACCTGCTGACTGTGAGGAGGATGAGCTGGGGAAAATCTTG
Seq A exon
GTGAGAATTTGCTTCCAGTGGACACATGAGTGTCAGGAGAGAGCCCTGGCACACACAGCTTTCTTTCATGATGTTAGTGCTGCCTGTGTAGGCATGTCAACACTCCCCAGCAGAGATGACCATACTGGCTCCTAGAGTGTCCAACTGGAGTTTACTTGATATCTGCGCTGCTGGGTGTCTCCGTCTGCTTTCCTGTCTCCTCTGCATTTCCTAGAACTATCCACGCTTTAGTTTCTGCATGCACAATTTAGGCCCTGTCCATCTGTGCTGCTTCCCTACAGGAATAACTAGGTGCTACAACCCCTAGTTTATCTATGTTCGTGTGTATGCATACTTCTGGGTGCACACATGTGTGTAGGTACATAGAAACACATGTTTGTGTGTCTCCCAGAGAACAGTCATACATCAACTTGACAGTTGTGGGACACCTACCTTTTTCTTTCACCTATGTGACTTAACAGAATCACCAGAGCTGTCTGTCTTACTGAACATGCTTTGGAGTTTATTAATACCAACAAGTTCTAAACAGCAATGGCTCTGTGTGTTGTAAGTGTGGATATACGTGCCCATGTGTCCATACAGGTAGGTCTAAGTTCATGAGTCTACCTCTCTAACTTTTTATGTATAGACCTTCATGCTTGCTTTTCCAACATCACTGCCACCAAGCCAGGCAAACTTCTCATTGTCAGGTCACCTGGTGCAAGGAAGCAGTAGGATAAGTGACCTGCTATAAATTTGAGTAACTGGAAGGCAGACGTCACCAGAGATACCTGGTGTCTGCCTGGACAAGGGTTCAGAGAAAAGAAAGGTTAAGAACCAGTAGGGTGCAGTAGGCCTGAATCTCTCGGCCCACAATCTCTCTTACAG
Seq C2 exon
AAGGAGGAACTTCCAGGGCCTACCAAGTTTGACATCTATGAGTTCCACTTCTCTGATCTGGAGTGCACCGAGCTGGAGCTAGTCAAATGTGGCATCCAGATGTACTACGAGCTGGGTGTAGTCCGAAAGTTCCAGATTCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065:ENSRNOT00000000077:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAAGGGATCGCCTGGG
R:
TGGGGAATCTGGAACTTTCGG
Band lengths:
208-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]