BtaINT0109233 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108845801-108847266:+
Coord C1 exon
chr6:108845801-108845875
Coord A exon
chr6:108845876-108847182
Coord C2 exon
chr6:108847183-108847266
Length
1307 bp
Sequences
Splice sites
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
3' ss Seq
TGTCCCTGCTCCCCCTTAAGCCA
3' ss Score
5.86
Exon sequences
Seq C1 exon
GTTGCTCTGCTGGTGGCAGCTGAGTTCTGGGAGCAAGGGGACTTGGAGAGGACGGTTCTGGATCAGCAGCCCATC
Seq A exon
GTGAGTGTCGCCTCCAGTATCCTCCACACCTGTCCCGGCCCTTGGGAGCTCCCAGGGCCCTTGGGGCTGGGCCCAGACTGGGGACCCCCAGGGGTTCTGGAATCCTGGGGCCTAACTCTCACTTTGTGGGGTCATGTGACGTGAGCCTGGATCTGGGTAAAGTTGTGGAAATACAAGGATTGGGTAAAGATGTGATCCCCCGCAGAGGCAGAAAGCTGTTGCCAAAGCTGCAGAGCCAGGCTGCAGCTCCTGGCCGAAAGCCCCCGTGGGCCCAGGCAGCTCTGGGGTGAGCCCCTGTGTGGCTGCGAGCTGCTCCAGGGAGGCTCAGGGTGTGGCAGGCCTAGCCCATGGGAAGAGTGCTGGGAGGGGGAGTGGTGGCCAGAGTCCAGGGCTCACCTGGACATGGCTGTGGCCGTGGAGAGAGTAGCCGAGGTGGGGAGTGTGCAGCAGGGCTGGGGTGGTATGCAGAGCAGGACTGCCCACTACTGGAAGGACACGGGGGCTTGGACCCATGCCCACAGTCACCAGGCCTCACAGGAGTGGAGGTGAGAGAGGGAGGCAGTCTTGGTGTACCTGGAGCTCCATCTGCCCACAGGCCCACAGGATGCCAGGATCTTTGGGTCAGCAGTGTGGGGGTCAGGAATCTGTTGCTAGACCGAACTGGTACCTGCATGGGGATAAGGACACGAGCACTGCCCAACAATGACCAGAAGAGACGGAGGGAGGTTTGGTCTCACAGGCCAACTCCAGCCTCTGACGAGCTCTCTGAGCATGGGGCTGCGAAGACCGGGGGCCAGGTGCAGACTGCAGGAAAGGGTGCCCTGACCAACCCGGCATCTTGATGGGAGGACAGGCAGCCTGTCTCCCTGGGCTAGACCGCTAGGGTCCTGCATGACTCACTCCAGCACGCTGAGCTCCAGACAACGGGCAGCTTTGAGGAAGAGACTGCCAGGAGGCAGCTCAGAGGGATAGTCCAGAGGCTGGACACTAAATCAGCTCCTTCAGAGTATCTGGGCTTTGCCCCTTAGGAGCTGGGGGCCAGGTCTCGGGTCAGGACCATGGATAGCTCATGGGGGAGCTGGAGGAACTTGGCTCCAAGCGCCACACCAGGGCTGGCGCGGCAGGGGCCCAGCACCACCTAGGGCAGCTCCCCAGAATGGCACAGTGTCTTGGAGGGGAGTGGGGGCTCCTGGGTTTCCCTTCCAAGGTGAGCCCTACATGGACAGGCTCATCACGTTGGGGTGGAGCTGAGTCCTGAGGCTCAGGGAGGTGTCGGAGGCCTCACGGTGTCCCTGCTCCCCCTTAAG
Seq C2 exon
CCAATGATGGACCGGAACAAGGCAGCTGAGCTCCCCAAGCTACAGGTCGGCTTCATCGACTTCGTGTGCACGTTTGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480:ENSBTAT00000052174:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]