DreINT0111807 @ danRer10
Intron Retention
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24712508-24713036:-
Coord C1 exon
chr14:24712962-24713036
Coord A exon
chr14:24712592-24712961
Coord C2 exon
chr14:24712508-24712591
Length
370 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGA
5' ss Score
1.82
3' ss Seq
ACACGATGTTTCTTCTCCAGCCC
3' ss Score
8
Exon sequences
Seq C1 exon
GTGGCGCTGTCTGTTGCTGCTGAATTCTGGGAACAGGGTGACCTGGAGAGGACAGTGCTGGAGCAGCAGCCCATT
Seq A exon
GTGAGAGATTGCATGGAATGAAGGGGGGGTAGGAGGGAACAAAAAAAAAGGAGTAAGAATGAAAAGTTCCCATGGGTCATGTCGTGATGTACTGCCTATTATGCGGTGCAGTGAATCAGAAAGAGCGGTCACAATGGCCCAGTCAAACAGACCACTTCCAAGCCCTCAGTTTTCCTCATTCATGATAGGAATTGTGAAATATCAACTATTGAAGAAAAAAGCCAACCAAATGCTAAAACATAACATAAATATTTCTACTTTATTCGAAATTGATCTTCAGAACTCCTATGTGTAATGGTGGTTTTTTGCATTGGTAGCTAGTGTGTTTTCATATTGATACAGAATTAAGTACACGATGTTTCTTCTCCAG
Seq C2 exon
CCCATGATGGACCGGAACAAGGCGGAGGAACTTCCCAAACTGCAGTGTGGTTTTATTGATTTCGTCTGTTCTTTCGTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380:ENSDART00000000392:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(9.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]