RnoINT0108924 @ rn6
Intron Retention
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2331046-2331767:-
Coord C1 exon
chr14:2331693-2331767
Coord A exon
chr14:2331130-2331692
Coord C2 exon
chr14:2331046-2331129
Length
563 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
GCCTGTGTTTTCTTCACAAGCCC
3' ss Score
5.04
Exon sequences
Seq C1 exon
GTTGCTCTTCTGGTGGCTGCTGAGTTCTGGGAACAGGGGGACCTGGAGAGGACTGTCCTGGACCAACAGCCCATT
Seq A exon
GTGAGTGTGGCTTCCAGAATCTTCCATCTTGACATATGAATTAGAATGCTTGGTAGTGCTCCAGACCCCAGTTACTTAAGGTCCCAGAGTCTTATCCTGGATTTGTGGAGCCCTTTGGCATGACTATGGGTAACTTGGCATCTTGTAGTAGAATAGAAATCATGAAAAAATTGGAAGATCAGAGTTGTATCTCACGATCAAGAGCACCTAGTGTCTATGCAGCCTCAGAGTACACGCACTAGGCAGGACAGTCCAGGGAGGTCAACTGAGAAGGGCAAACCTAGGGAAAGACAGGGAGAAGTAGTCCAAGATAAGACAACGAGGGAGTTACAGTTAGGGTTAGGACCCCCTGCTAGCACCAGAGACGGTATCTATACACACAGGAACTATATAAGGTTGTTCTGACCACTTATCTTCCAAACCAGCTCTAGCTAATGGGAAGAACTGTTTAGAGCAGGCTTTAAGCAAGGTATAGACTCAGCGAGAAAGAGGTTTTTGCCAGCAAACAAAGCCTCGTAGGGAGAGACAGCTCCCATGTCATCTGCCTGTGTTTTCTTCACAAG
Seq C2 exon
CCCATGATGGACCGGAACAAAGCAGCTGAGCTCCCCAAGCTACAAGTTGGCTTCATCGACTTCGTATGTACTTTCGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065:ENSRNOT00000000077:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(9.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]