BtaINT0110734 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112145964-112147021:-
Coord C1 exon
chr8:112146934-112147021
Coord A exon
chr8:112146050-112146933
Coord C2 exon
chr8:112145964-112146049
Length
884 bp
Sequences
Splice sites
5' ss Seq
AGTGTTAGT
5' ss Score
-4.97
3' ss Seq
CCCGCCCCGTGTGTCCACAGAGC
3' ss Score
11.44
Exon sequences
Seq C1 exon
TTTGTTGCCTCATGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGACGCTATCCCCAGT
Seq A exon
GTTAGTTGCTCGTTTTCTCACTCTCCACTTTCACACGTAGGGGCCACACCCACTAGGGATCCTGGCACAGAAAACCGGGTCTCCCAGACCCAGGGACTCACCCACGTCCCTGAAAGGAGAAAACCGGTTCCTCTGACAGCTGGTTACACAAGGAGGTGCTCCTCCTTTGTCTCCCCAAGTTCTCCTGAGAACCCAGAGCGGGGCTGGGCCAGGGTGGGTCGCAGCCTTGCCCCGCTGTCCAGGTGGGGAAACTGAGGCCCCAGAGAGCAGTGACTCTGCTGAGGTCACACCCCAGGCGGTGGCAGAGCCCGGCCCGGAACCAGGGCTCTGGAGCTCTCTTGCATCCAAGCCGGGGCCCTCGCTGTGGGCAGTAATATGAGCAGTGCCTCACATCTCCCCGGGCCGTTTATAAGGCGCTTTCACGATCCTCGGGCTTCCCTGGTGGCTCAGCTGGTAAAGAATCCGCCTGCCATGTGGGAGACCTGGGTTTGATCCCTGGGCTGGGAAAGATCCCCTGGAGAAGGGAAAGGCTACCCACACCAGTATTCTGGCCTGGAGAATTCCACGGAACGTGTAGTCCGTGGGGTCACAGAGAGTCGGACACGCCTGAGTGACTTTCAGAATCCTCATTCCCTTCTGCCATGCTGACACCTCTGGGAGTCAAGCTCGGTAGGGGTCCTTACCCACCTCTGAGTGGAGGGAACCGAAGCCCACAGATGGGCCGGTCGGGCAGTCACCTAGAGACAGTCAGGACTGGCACCGGCGTGCCCCGCCTCCCCGGGCAGGACCGGAAGAGAGAGGAAGTGACAGGCGTGGCTGCGGGGAGAAGTGTGCTGGGGGCGGGGCGTGTTGCTCCCGGCTGACCCCGCCCCGTGTGTCCACAG
Seq C2 exon
AGCGACTTCACCTCCGCTTGGAGCACCAATCACCACCTGGCCAGCATATTTGACTTCACACTGGACGAGATCCAGAGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958:ENSBTAT00000022557:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]